Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3195 ATGGAGTGGAATGGAAGCACAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACCACAACCAGTTCTCATATCAAGGATTAATGGAAGTGAAACAACAAGAGTGGACAGAGACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAACTTGCAAGAAAAGAAAAAGCGATTAACGAGTGAACAAATGGAACAACTGGAGAGTAGTTTCCAGGAGGAGATAAAATTGGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGTTACAACCTCGTCAGATTGCTATTTGGTTCCAAAATAGACGTGCAAGGTGGAAGACAAAGCAACTTGAACACTTGTATGATTCACTTAGACACCAATTTGAGGTTGTGTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTTATGAAGTTGAAGGCTATGTTGAAAGAGCAAGGTTGTTCTGCTAGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGGAAGAAACAGAAACAGTAGAAAGCACGTCAGAGGCGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTTGTTTCAATTTAGAGGATTATAACATTAATAACAGTGTTCCACTATTGCCTTATTGGCCTGCTGTACCTTATAACTATCAACCTTAA 675 0.397 MEWNGSTRSFVPQPESSLSFLYNHNQFSYQGLMEVKQQEWTETMFPEMEKMMKYGNLQEKKKRLTSEQMEQLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVMKLKAMLKEQGCSASRMQGYYTEMSVEETETVESTSEAVKGKIHQQLNIDEGNCCFNLEDYNINNSVPLLPYWPAVPYNYQP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3195 224 Coils Coil 121 148 - -
Mal1g3195 224 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Mal1g3195 224 Pfam Homeobox associated leucine zipper 115 149 IPR003106 GO:0006355|GO:0043565
Mal1g3195 224 SMART HOX_1 58 119 IPR001356 GO:0003677
Mal1g3195 224 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 217 - -
Mal1g3195 224 CDD homeodomain 60 116 IPR001356 GO:0003677
Mal1g3195 224 Gene3D - 55 123 - -
Mal1g3195 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 217 IPR045224 GO:0003700
Mal1g3195 224 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Mal1g3195 224 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Mal1g3195 224 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Mal1g3195 224 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Mal1g3195 224 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3195 Mal-Chr1 49170477 49172477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3195 1 145 Homeobox Transcription Factor Family AT5G03790 51.852 3.20e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal1g3195 Homeodomain 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3195 - - gmx:100778007 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3195 1 49170477 49172477 Mal1g3195 1 49170477 49172477 ECH
Mal1g3195 1 49170477 49172477 Mal3g4310 3 122469399 122471784 PCT