Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3172 ATGACGGATTCCGAGAAAGACACGGCCACACTTTACATCGGCGACCTTCACTCAGACGTAACCGACGCTGAGCTTTACAAGGCTTTTTCTGAATTCGACGTCATTTCCGTTCGCGTCTGTAGAAACTCTGCCACTGGGAAATCACTCGGTTATGGTTACGTCAACCTCTCCTCTTATCTAGAAGCAATTCATGCAATGGAGAAGAAGAATCATTCTTCCCTCAATGGAAAAGTGATAAGGGTCACGTGGTTTAGTCGTGACGCTGATGCAAGGAAAAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGAAGAATCCATAGATGATATGGGACTACATGATTTATTTGAAAAATATGGGTATATTTTGTCCAGCAAAATTGCCATGTCTGAGGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGAAGAAGAGGAGTCTGCAAATGAAGCTATCGAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTTGCTGACCCGGATGCCAAATTTACAAACTTGTATGTTAAGAATTTGGACCCAGCAATTACTGAAGAACGTCTTAAAGAAAAGTTCTCCTCTTTTGGAAAAATCATTAGCTTGGCTATTAAAAAGGATGAGAATGGGCTGTCAAAAGGCTTTGGATTTGTGAACTATGACAACCCAGATGATGCTAGACAAGCGATGGAAGCAATGGACGGTTCACAATTTGAAGGTTCAAAGAGCTTGTATGTTGCAAGGGCACAGAAAAAGGTTGAACGTGAGCAGATATTGCATCATTTGTTTGTGGAAAAAGGCAAGGAAAGCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATATTAGTGTTAGTGATGAAGAACTACGGGACCAGTTTAATGCATGTGGCGCAATATTGTCTGCAAAAGTTATGCGAGATCACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCTACCATGCAGGAGGCCCTTAAGTCTGTGTACATTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGATTTTGCTCAGAAGAAAGAGGTTAGGGAAAAACTATTGCAGCTTAAGCATGCTCAGAAACTAGAAGGATTAGCTGGACCTTCAACTGCTGTTATCCCTGGTGCACCTCCTCCTTTCATCTACACATCTAGTGGTGTTGTTTATCACCCTCCTTTGGGATCAGGATGGATTGCTAATGGCTTTGCATCTACTTCTAAAACATTTCAACAATCACCAGCTTCTATTATCTCCAACAGTGGTAAGCTGATATGGAAAAACCCGGGCTGGATGATTGACAACACAAATTCAAAAGAGTTGAGTACTCATTCCGGACAGGCCAAGTATGTGGCCAGTGGATGCCAGCAGGAGATGCAAGAAAAATCTGGAATTTCATCTGCTATGCAGGTACTTGATCTTCAGAAGACCCAAGTTTCTGGCCAGGACGTGCTTCATTCAAATTCAATTTCAGCTGGGGTTTCTGTCATTTGA 1554 0.4151 MTDSEKDTATLYIGDLHSDVTDAELYKAFSEFDVISVRVCRNSATGKSLGYGYVNLSSYLEAIHAMEKKNHSSLNGKVIRVTWFSRDADARKSGKGNVFVKNLEESIDDMGLHDLFEKYGYILSSKIAMSEDGKSKGFGYIQFEEEESANEAIEKMNGSTVRDKQIYVGKFIRKSERSFADPDAKFTNLYVKNLDPAITEERLKEKFSSFGKIISLAIKKDENGLSKGFGFVNYDNPDDARQAMEAMDGSQFEGSKSLYVARAQKKVEREQILHHLFVEKGKESLKYKGSNIYVKNIDISVSDEELRDQFNACGAILSAKVMRDHKGISKGFGFVCFSTMQEALKSVYIFNGCMFHGKPLYVDFAQKKEVREKLLQLKHAQKLEGLAGPSTAVIPGAPPPFIYTSSGVVYHPPLGSGWIANGFASTSKTFQQSPASIISNSGKLIWKNPGWMIDNTNSKELSTHSGQAKYVASGCQQEMQEKSGISSAMQVLDLQKTQVSGQDVLHSNSISAGVSVI* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3172 517 PANTHER POLYADENYLATE-BINDING PROTEIN 8 473 - -
Mal1g3172 517 SUPERFAMILY RNA-binding domain, RBD 288 371 IPR035979 GO:0003676
Mal1g3172 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 367 IPR000504 GO:0003723
Mal1g3172 517 Gene3D - 1 96 IPR012677 -
Mal1g3172 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 360 IPR000504 GO:0003723
Mal1g3172 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Mal1g3172 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Mal1g3172 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 256 IPR000504 GO:0003723
Mal1g3172 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Mal1g3172 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 86 IPR000504 GO:0003723
Mal1g3172 517 PANTHER RNA BINDING PROTEIN 8 473 - -
Mal1g3172 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Mal1g3172 517 SMART rrm1_1 291 363 IPR000504 GO:0003723
Mal1g3172 517 SMART rrm1_1 188 261 IPR000504 GO:0003723
Mal1g3172 517 SMART rrm1_1 97 169 IPR000504 GO:0003723
Mal1g3172 517 SMART rrm1_1 10 82 IPR000504 GO:0003723
Mal1g3172 517 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 9 474 IPR006515 GO:0003723
Mal1g3172 517 CDD RRM1_I_PABPs 11 87 - -
Mal1g3172 517 Gene3D - 97 181 IPR012677 -
Mal1g3172 517 Gene3D - 281 376 IPR012677 -
Mal1g3172 517 CDD RRM2_I_PABPs 94 170 IPR045305 -
Mal1g3172 517 Gene3D - 182 280 IPR012677 -
Mal1g3172 517 SUPERFAMILY RNA-binding domain, RBD 181 271 IPR035979 GO:0003676
Mal1g3172 517 SUPERFAMILY RNA-binding domain, RBD 7 176 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3172 Mal-Chr1 49008605 49012371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3172 8 411 Eukaryotic Initiation Factors Gene Family AT2G36660 54.279 1.07e-153 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3172 K13126 - gmx:100804671 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3172 1 49008605 49012371 Mal1g3172 1 49008605 49012371 ECH
Mal3g4291 3 122215769 122219902 Mal1g3172 1 49008605 49012371 PCT