Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3167 ATGTCAGAACCTTCTACCACCTCTCCTCCACCAGCAACCAAAAGCTGGGCCGATCAAGCCGACGAAGAAACCAATTCAACCAACCCATCCTCCAGCTCCGCCGCCGCAGAAACACCTTCCCTCAACATCGATGAAATAAACATCGACGAAGACAAGAAATCTTCTTCTAAACTCTTAGACGATCCCGACGACTCCAACATTCAAGCGGTTACATCTGGAGACACTCCTTACACATCTGCTGCGACGTTCGAAGAATTGTCACTGTCGCCGGATCTTTTGAAGGGACTTTATGTGGAGATGAAATTTCAAAAACCTAGTAAAATTCAAGCAGTGAGTTTGCCGATGATTCTTACTCCTCCACATAGGGATTTGATTGCCCAAGCTCATAATGGTTCTGGAAAAACCACTTGTTTTGTGCTTGGAATGCTTAGTAGGGTTGATCCGGATTTGCAAGCTCCTCAGGCTCTCTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGAACATTGAAGTTCTCCGTAAAATGGGAAAGTACACGAGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGGGATTCAATTCCGGTATCAAAAAGGGCGCCTATTATGGCTCAGGTTGTTATTGGCACTACTGGCACAATTAAGAATTTGTTCACTTATAAGAAACTTGGAGTGACAAAATTGAAGATTCTCGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCTCTAAGGATAATGAAAGAAATAGAAAAATTCAATTCAAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACTGTCACGAAATTTGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTGAAGCAGTACAAAGTTCATGTTCCTGATGAGCTCGCTAAGATTGATGTGATTAAAAATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGAACATGATGATAGAGACAAGATCGTCAAGGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCACTGAAGTACACTGCTGAGTTCACCCGTGGCCAGGAACAAGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAGCTCATGTCGAAGATTGAACAATATTTTGGCACCCATATAAAAGAGGTGCAAGACAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAAGAAGCTGGTTTACTGTTTTGA 1482 0.413 MSEPSTTSPPPATKSWADQADEETNSTNPSSSSAAAETPSLNIDEINIDEDKKSSSKLLDDPDDSNIQAVTSGDTPYTSAATFEELSLSPDLLKGLYVEMKFQKPSKIQAVSLPMILTPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPDLQAPQALCICPTRELAIQNIEVLRKMGKYTRISSECAVPMDRRDSIPVSKRAPIMAQVVIGTTGTIKNLFTYKKLGVTKLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNDTVTKFVTRIVEKKEHNKLFVKKEELSLDAVKQYKVHVPDELAKIDVIKNYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALEHDDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYTAEFTRGQEQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKLMSKIEQYFGTHIKEVQDRSVEDYKVALKEAGLLF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3167 493 MobiDBLite consensus disorder prediction 1 40 - -
Mal1g3167 493 CDD SF2_C_DEAD 305 451 - -
Mal1g3167 493 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 473 - -
Mal1g3167 493 MobiDBLite consensus disorder prediction 61 75 - -
Mal1g3167 493 SMART ultradead3 101 308 IPR014001 -
Mal1g3167 493 MobiDBLite consensus disorder prediction 1 75 - -
Mal1g3167 493 Pfam Helicase conserved C-terminal domain 318 442 IPR001650 -
Mal1g3167 493 MobiDBLite consensus disorder prediction 45 60 - -
Mal1g3167 493 Gene3D - 60 298 IPR027417 -
Mal1g3167 493 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 110 IPR014014 GO:0003724
Mal1g3167 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 490 IPR001650 -
Mal1g3167 493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 291 IPR014001 -
Mal1g3167 493 SMART helicmild6 347 442 IPR001650 -
Mal1g3167 493 Pfam DEAD/DEAH box helicase 107 279 IPR011545 GO:0003676|GO:0005524
Mal1g3167 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 460 IPR027417 -
Mal1g3167 493 PANTHER DEAD-BOX HELICASE DBP80 60 473 - -
Mal1g3167 493 CDD DEADc_DDX19_DDX25 88 285 - -
Mal1g3167 493 Gene3D - 299 483 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3167 Mal-Chr1 48900460 48907573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3167 82 474 Eukaryotic Initiation Factors Gene Family AT1G72730 35.787 1.46e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3167 K18655 - gmx:100778091 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3167 1 48900460 48907573 Mal1g3167 1 48900460 48907573 ECH