Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3164 ATGGATGAGGAAAAGGTTCATATTAACATTGTGGTTATTGGTCACGTCAACTCTGGGAAGTCAACCACTGCTGGTCATTTGATCTACAAGCTTGGAGGTATTGCAAAGAATGACATTGACACATTTGAGAAAGAAGCTGCTGAGGTAAATAAGCCTTCATTCAAGTATGCGTGGGTGCTTGACAAACTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTTCTATGTGGAATTTTGAGACAACCAAGTACCGTTGCACTATCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGGACATCCCAAGCTGATTGTGCTGTTCTTATTGTTGATTCCACTCCTGGTGGTTTTGGAGCCGGTATTTCCAAGAATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAAATGATCTGCTGCTGCAACAAGATGGATGCCATTAGATACTTCAAGTATAGGTATGAAGAAATTGTGAAGCAACTTTCACCCTTTTTGAGCAAGATTGGCTATAACCCAGACGAAATTCCATTTGTTCCCATATCTGGTTTTGAGGGAGATAACTTGATTGAGCGCTCTACTAATCTTGGCTGGTACAAGGGTCCCACCCTTCTTGAAGCTCTTGACCAAATCAACAAGCCTAAGAGGCTATCAAACAAGCCTCTCCGATTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTCGCTGCGGGATGTGTTAGGACTGGTGTCTTGAAACCTGGAATGGTGGTGAGTTTTGCCCCAACTGGGCTGCTAGATGAAGTGATGTCTGTGCAGATGGACCATGAATATCTCACCGAGGCCCTTCCTGGTGATAATGTGGGATTTAATGTTTTTAATGTTAAGAATGTGTCTGCTGCGCATCTCAGGCGAGGCTATGTTGCCTCAAACTCCAAGCATAAACCAGCCAAGGAAGCCACTAACTTTACATCTAAAGTTATCATCACGGATCACCCTGGCCGGATTGGAAACGGCTATACACCTGTTCTTGTCTGCCACACCTGCCACATTGCTGTCAAGTTTGCTAAGCTTCTTGCCAAGATGGACAGGAAATCTGATAAGGTAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGGTGGCATTATTCAGATGATTCCCACCAAGCCCATGGTGGTAGAGACTTTCTCTAAATGTCCTTCACTCGGCCGATTTGTTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCTTGGCTGTGAACAAGAAGGATCCTGGTGAAGGAGATAAGCTTAAGTCACTTTGCTGGGAGTTACAGAGTCGAAATAAAATGCTGATGGAAGAATGCAAACATGTAACTGCTGGGGGGCAAAACTTCAGGCTGGACAATTTGGATGAAGCATTGACAAAGAACAATGATGTATTTGAAACATTTAAACTAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTCTTGAAGAGAAAATCAGAGAAATCTGATGTTGCACATATGGAGTTAATTGATCAGGGGGAGAGAAAACGACCAAGAGAAAATGTTGAATAG 1614 0.4343 MDEEKVHINIVVIGHVNSGKSTTAGHLIYKLGGIAKNDIDTFEKEAAEVNKPSFKYAWVLDKLKAERERGITIDISMWNFETTKYRCTIIDAPGHRDFIKNMITGTSQADCAVLIVDSTPGGFGAGISKNGQTREHALLAFTLGVRQMICCCNKMDAIRYFKYRYEEIVKQLSPFLSKIGYNPDEIPFVPISGFEGDNLIERSTNLGWYKGPTLLEALDQINKPKRLSNKPLRLPLQDVYKIGGIGTVAAGCVRTGVLKPGMVVSFAPTGLLDEVMSVQMDHEYLTEALPGDNVGFNVFNVKNVSAAHLRRGYVASNSKHKPAKEATNFTSKVIITDHPGRIGNGYTPVLVCHTCHIAVKFAKLLAKMDRKSDKVIEKEPKFLKNGDGGIIQMIPTKPMVVETFSKCPSLGRFVVRDMRQTVAVGVILAVNKKDPGEGDKLKSLCWELQSRNKMLMEECKHVTAGGQNFRLDNLDEALTKNNDVFETFKLEIEKMAKSMKELKKENQFLKRKSEKSDVAHMELIDQGERKRPRENVE* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3164 537 Gene3D - 1 227 IPR027417 -
Mal1g3164 537 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 225 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mal1g3164 537 PANTHER TRANSLATION FACTOR 1 443 - -
Mal1g3164 537 Pfam Elongation factor Tu C-terminal domain 322 430 IPR004160 -
Mal1g3164 537 Gene3D Translation factors 228 317 - -
Mal1g3164 537 Gene3D Translation factors 324 431 - -
Mal1g3164 537 CDD EF1_alpha_III 324 427 - -
Mal1g3164 537 CDD EF1_alpha_II 228 319 - -
Mal1g3164 537 MobiDBLite consensus disorder prediction 507 537 - -
Mal1g3164 537 Pfam Myosin-like coiled-coil protein 472 528 IPR026183 GO:0019905
Mal1g3164 537 PANTHER ELONGATION FACTOR 1-ALPHA 1 443 - -
Mal1g3164 537 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 327 430 IPR009001 -
Mal1g3164 537 Coils Coil 485 519 - -
Mal1g3164 537 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mal1g3164 537 Pfam Elongation factor Tu GTP binding domain 6 220 IPR000795 GO:0003924|GO:0005525
Mal1g3164 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 247 IPR027417 -
Mal1g3164 537 SUPERFAMILY Translation proteins 224 321 IPR009000 -
Mal1g3164 537 CDD EF1_alpha 9 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3164 Mal-Chr1 48851438 48855604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3164 1 435 Eukaryotic Initiation Factors Gene Family AT5G60390 78.261 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3164 K03231 - qsu:111999429 677.167