Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3129 ATGCAAGTCTTGGAAGAATTCATGAGTGTTTCCAAGGATGTTCATACACAACAAATCATAAAAGGAAAGCGAACAAAGCGTCAAAGGTTACCCTCTCCACTTAGGTTAGCCATTATGCCTTCGAATAATTCTTGCAATGAAGGTACGAGTTATAATGATAATAACGACAATTCGGGAGGAATTGAATTTGTTAAAATAGAATCGCGTGATCGATCAAAAGAAGAAAAAGAAGAAGAAGAAGATATGGCGAATTGTTTAATTTTATTAGCTCAAGGAGGTCATCGTCAAAATGAGACACATGTGTCAAATCATCATCATCATCATCATCAAATTAACAACAAATCTTCGAATTTTTATCTTTACCAATGCAAGACTTGCAATCGTTGCTTCCCTTCATTCCAAGCACTTGGTGGACATAGAGCAAGTCATACCAAACCTAATAAGGCAAATTGTAACAATAACGTTACACAAAAAAAGCAAGCAGCTACAACAACTTCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCTTTGCAAGCCTTTACCGCCGCGACCCCTATTACTACTATAACTACTACAAAAAAATCGAAAGTTCATGAGTGTTCGATATGTGGTGCCGAATTCTCATCAGGGCAAGCGTTAGGAGGACATATGCGACGACATAGGACTCTTGTGAACACGTCTACAACGACAACAACAACAACTTCTATGAGTTTGAGTATTGGTAGTCCTAAATCTCATGAAGCTAAGAAACCTAGGAATGGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATCAATCCAAGTTTTCTTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 903 0.371 MQVLEEFMSVSKDVHTQQIIKGKRTKRQRLPSPLRLAIMPSNNSCNEGTSYNDNNDNSGGIEFVKIESRDRSKEEKEEEEDMANCLILLAQGGHRQNETHVSNHHHHHHQINNKSSNFYLYQCKTCNRCFPSFQALGGHRASHTKPNKANCNNNVTQKKQAATTTSFVDDHYDPTMNTILSLQAFTAATPITTITTTKKSKVHECSICGAEFSSGQALGGHMRRHRTLVNTSTTTTTTTSMSLSIGSPKSHEAKKPRNGLKLDLNLPAPEVDQRDQSKFSFQPRENVIAFSNSSLVDCHY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3129 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Mal1g3129 300 MobiDBLite consensus disorder prediction 41 60 - -
Mal1g3129 300 ProSitePatterns Zinc finger C2H2 type domain signature. 205 225 IPR013087 -
Mal1g3129 300 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Mal1g3129 300 Pfam C2H2-type zinc finger 202 226 - -
Mal1g3129 300 Pfam C2H2-type zinc finger 121 145 - -
Mal1g3129 300 PANTHER ZINC FINGER PROTEIN ZAT5 13 299 - -
Mal1g3129 300 SUPERFAMILY beta-beta-alpha zinc fingers 120 151 IPR036236 -
Mal1g3129 300 MobiDBLite consensus disorder prediction 231 247 - -
Mal1g3129 300 MobiDBLite consensus disorder prediction 231 264 - -
Mal1g3129 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 225 IPR013087 -
Mal1g3129 300 SUPERFAMILY beta-beta-alpha zinc fingers 200 226 IPR036236 -
Mal1g3129 300 SMART c2h2final6 121 143 IPR013087 -
Mal1g3129 300 SMART c2h2final6 203 225 IPR013087 -
Mal1g3129 300 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 13 299 - -
Mal1g3129 300 Gene3D Classic Zinc Finger 183 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3129 Mal-Chr1 48075219 48076121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3129 19 300 C2H2 Transcription Factor Family AT5G03510 40.878 7.09e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g3129 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3129 - - mtr:MTR_1g062780 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1879 1 24444930 24445970 Mal1g3129 1 48075219 48076121 ECH
Mal1g3129 1 48075219 48076121 Mal1g1879 1 24444930 24445970 ECH
Mal1g3129 1 48075219 48076121 Mal1g3129 1 48075219 48076121 ECH
Mal4g0878 4 10824964 10825863 Mal1g3129 1 48075219 48076121 ECH
Mal7g2008 7 72299394 72300287 Mal1g3129 1 48075219 48076121 ECH
Mal1g3129 1 48075219 48076121 Mal4g0878 4 10824964 10825863 ECH
Mal1g3129 1 48075219 48076121 Mal7g2008 7 72299394 72300287 ECH