Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3120 ATGTTTCAAACAACCTGCATTTTCCTAATCTCATTTCTTTGTTCCTTTTTCACCCATGGAACATCATTGCTTAACCTCACTCTCCCTGGTCAACATCCAGACCCTGAATCTGTTGCCTTAGAAGTTCACAGGAAAGTGAATATTTCAATGTTAAGAAGGGAAATGCTATCAATATCAAACAAAGAGTTTTCAACATCATGTCTAACAGGAAACCCAATAGACGATTGTTGGAAATGTGACACAGATTGGGCCAACAATCGTCAAAGGTTAGCTGATTGTGCCATAGGTTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTTTACATTGTCACAGATTCCTCAGACAATGATGCAGTGAATCCAAAACCTGGCACACTTAGATATGCTGTTATTCAAAATGAACCACTTTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTCAAAACCATTGATGGTCGTGGTGCTGATGTGCATATTGTTGGTGGTGGTTGCATAACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCTTCGGGTAACACCAACGTGCGTTCGAGTCCAGAACACTACGGCTTCAGAACAGAATCAGATGGAGACGGAATCTCAATATTCGGATCAAGAGACATATGGATTGACCACTGCACACTCTCACGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACAGCAATAACAATCTCCAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGCCACAGTGACCACTACAAACCAGACTCAGCAATGCAAGTCACAATAGCATTCAACCATTTTGGTGAACAATTAGTTCAAAGAATGCCACGTTGCCGGCTCGGATACATACACGTGGTGAACAACGATTTTACGAGGTGGGAGATGTATGCTATTGGTGGAAGCGGGGGACCAACTATTTTTAGTCAAGGTAACCGTTATACGGCTCCTGAGGATGTTGATGCGAAGCAAGTGACGAAGAGGTTGGATTCTGGTGACGGGGAATGGACGTCATGGAATTGGAGATCCGAAGGTGATTATATGGCGAATGGTGCATTTTTTGTCGATTCGGGTAGTAAGAGTGAAGGTAATTTTCAGAAGGCTTATAGTGTTGATCCTAAAGCTGTTGATCGGATTTCTACTCTTACTATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTATGTCATATTCCGGAGAAGAAGAGTACACAGATGACATGTCACAGAGTGCAATGCTGTTGACCCATTATTCACTTACTTTGACTCTTGTAACACTTTTTGTTGCACTCTTATGTTTGTTGTCTCATGCTGCTTCCCTAACAATAGATCTTTAA 1452 0.4105 MFQTTCIFLISFLCSFFTHGTSLLNLTLPGQHPDPESVALEVHRKVNISMLRREMLSISNKEFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDGEWTSWNWRSEGDYMANGAFFVDSGSKSEGNFQKAYSVDPKAVDRISTLTMAAGVLGVARDNNLGMWTRAPNGGGDYSMSYSGEEEYTDDMSQSAMLLTHYSLTLTLVTLFVALLCLLSHAASLTIDL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Mal1g3120 483 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mal1g3120 483 PANTHER PECTATE LYASE 1 435 - -
Mal1g3120 483 SUPERFAMILY Pectin lyase-like 71 399 IPR011050 -
Mal1g3120 483 Pfam Pectate lyase 155 334 IPR002022 -
Mal1g3120 483 PANTHER PECTATE LYASE 18-RELATED 1 435 IPR045032 GO:0030570
Mal1g3120 483 Gene3D - 70 412 IPR012334 -
Mal1g3120 483 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3120 Mal-Chr1 47393221 47398432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3120 1 447 Polysaccharide Lyase AT3G53190 71.239 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3120 K01728 - gmx:100815062 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3120 1 47393221 47398432 Mal1g3120 1 47393221 47398432 ECH
Mal3g4252 3 121799996 121803772 Mal1g3120 1 47393221 47398432 PCT