Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3059 ATGTCTACCTCTGCAACATCCTTAGCACTTCCATCACTCTTCACCAGAAACTCTCCACAATGTTTCTCTTCACTCCCTTCACTTTCCTTCAACCCTAATTTCAAACCCTTTTCCATTTCCTCTGTTTCTCTTCGTTCAACTTTGTCAATTTCACATCGTTTCATTTCTCGTGTTGCTTATTCTTCTGAATTTTACCAGGAAGAAGATACCTTTGATGATGGTGATAGTTACTCTGCCAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAATGTTGACAGTGCTCAACTTGCTGAGATATTTGAAAACGCTGGGAATGTTTTAATAGTTGAGGTGATTTATGATAAGACGACTGGAAGAAGCAGGGGATTTGGTTTTGTGACTATGTCTTCTGCTGAGGAAGCTCAAGCTGCTGCTCAGCAATTCAATGGATATCTACTGGATGGAAGGGAATTGAAAGTGAATGCTGGACCATCACCTCCTCCTCGCGAGAACTCTCGATTTGGTGAGAATTCTCGTTTTGGTGACAGTTCTCGTTCTGGAGGTCCTCCAAGAGGTGGTTCTTCTTCAGATAGTGACCACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACATGGCACTTGAGTCATTGTTTCGTGAACAAGGGCGGGTTTTGGAAGCTAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGCTTCGGATTTGTGACTTTCAGTAGCGCTGAAGAGGTCAACAGTGCTATTCGATCCTTAGATGGTGCGGACTTGAATGGCAGAGCTATCCGAGTCTCGCCGGCAGATAGTAGACCAAAGCGTCAATTTTGA 837 0.4397 MSTSATSLALPSLFTRNSPQCFSSLPSLSFNPNFKPFSISSVSLRSTLSISHRFISRVAYSSEFYQEEDTFDDGDSYSANQRLFVGNLPFNVDSAQLAEIFENAGNVLIVEVIYDKTTGRSRGFGFVTMSSAEEAQAAAQQFNGYLLDGRELKVNAGPSPPPRENSRFGENSRFGDSSRSGGPPRGGSSSDSDHRVHVGNLAWGVDNMALESLFREQGRVLEAKVIYDRESGRSRGFGFVTFSSAEEVNSAIRSLDGADLNGRAIRVSPADSRPKRQF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3059 278 Gene3D - 191 278 IPR012677 -
Mal1g3059 278 Gene3D - 59 190 IPR012677 -
Mal1g3059 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Mal1g3059 278 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 278 - -
Mal1g3059 278 SMART rrm1_1 82 155 IPR000504 GO:0003723
Mal1g3059 278 SMART rrm1_1 195 268 IPR000504 GO:0003723
Mal1g3059 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Mal1g3059 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 153 IPR000504 GO:0003723
Mal1g3059 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Mal1g3059 278 MobiDBLite consensus disorder prediction 151 194 - -
Mal1g3059 278 SUPERFAMILY RNA-binding domain, RBD 75 188 IPR035979 GO:0003676
Mal1g3059 278 MobiDBLite consensus disorder prediction 171 187 - -
Mal1g3059 278 PANTHER OS02G0815200 PROTEIN 1 278 - -
Mal1g3059 278 SUPERFAMILY RNA-binding domain, RBD 190 277 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3059 Mal-Chr1 45427897 45429821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3059 66 277 Eukaryotic Initiation Factors Gene Family AT4G34110 25.581 3.38e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3059 - - gmx:100786275 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3059 1 45427897 45429821 Mal1g3059 1 45427897 45429821 ECH