Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3051 ATGACTTTTCAGTTGCAGAAATTTTGCAGTGAAAGTTTTTTGAAGATGAATACATTTATGGATTCAAGAGAAAATAATAAATCATCAGAAGAAGTTGAAAGGTGCTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTCCACCTTTGATTCCATGCAAAGTTGTTTCTATTAAGTACATGGCTGATCCTGAAACTGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGGAAATGATGTTGCAGATTATGACAGTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAAACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCAATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGCGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGTGAGAAACATTAACAACAACAATAACAACAACAATAACAATGGGTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAAGTTAGGCCAGAATCTGTCCTTCATGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTGTTTACTACCCTCGCGCAAGTACACCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCCGCAATGCAGATTCGATGGTGTTCCGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGGATAAGTTGGTTTATGGGAATTGTATCTGCAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCGCCTTGGAGGCTTCTTCAGGTTAAATGGGATGAACCGGATTTACTGCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCACACAACCAAGGAAGAAATTGAGATTGTCGCCGCACCACGATTTCCCCCTGGACGGCCAAATTTCAGTGTCATCGTTTCCTAGTAACCTTCTAGGTCCGAACAACCTATTTCGTTGTCTACCCGAAGGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGTCGGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTGATAATCTAATGATGCAAAAATCTAGCTTGAGTGAGAATGTCTCTTGCTTACTATCTATGGCAAGCTCTACACAATCTTCGAAGAGATTTGAAGATGAGAAGAAACCTCAGCTTGTGCTCTTTGGCCAAAAAATTCTCACTGAGCAACAGATCTCTAACGATCGTTCATTAGATGGAAATGCCGATAAAATGAGTAATTTTTCCGATGGTTCAGGAACTCCTCTTCATCAACAAGGCTTACAAAAGCGCTCCTCCTGTGAGATTTTCCCATGGTATAAAGATAACCGCGCAGAAACAGAGGCGAGTTTGGAGAGTACTGATCACTGTAAAGTTTTTCTTGATTCAGAAGATGTTGGTCGGACAATTGACCTCTCTTTACTTGGATCTTATGAGGAACTGTATAGAAAGCTTGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGCCGCGTGCTCTACCGGGATATAACAGGAGCAGTCAAACACATTGGAGATGAACCATTCAGTAACTTTACAAGAACAGCAAGGAGGTTGACTATTCTAATGGATTCAAGCAAATAA 2118 0.4235 MTFQLQKFCSESFLKMNTFMDSRENNKSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVPPLIPCKVVSIKYMADPETDEVYAKLKLVPLSGNGNGNDVADYDSVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMVRNINNNNNNNNNNGLNSGANMTGREKVRPESVLHAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSAVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFTQPRKKLRLSPHHDFPLDGQISVSSFPSNLLGPNNLFRCLPEGTPAGMQGARHAHYGLPISDLHLSKVQSGLFPAGFVPFDHAAKLPSVSDNLMMQKSSLSENVSCLLSMASSTQSSKRFEDEKKPQLVLFGQKILTEQQISNDRSLDGNADKMSNFSDGSGTPLHQQGLQKRSSCEIFPWYKDNRAETEASLESTDHCKVFLDSEDVGRTIDLSLLGSYEELYRKLADMFGIEKYEKVSRVLYRDITGAVKHIGDEPFSNFTRTARRLTILMDSSK* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3051 705 PANTHER AUXIN RESPONSE FACTOR 26 701 - -
Mal1g3051 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 701 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal1g3051 705 Gene3D - 137 241 IPR015300 -
Mal1g3051 705 SUPERFAMILY DNA-binding pseudobarrel domain 132 257 IPR015300 -
Mal1g3051 705 Gene3D - 348 422 - -
Mal1g3051 705 Gene3D - 620 705 - -
Mal1g3051 705 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Mal1g3051 705 CDD B3_DNA 138 239 IPR003340 GO:0003677
Mal1g3051 705 ProSiteProfiles PB1 domain profile. 624 705 IPR000270 GO:0005515
Mal1g3051 705 SMART B3_2 139 241 IPR003340 GO:0003677
Mal1g3051 705 Pfam Auxin response factor 311 394 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal1g3051 705 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3051 Mal-Chr1 45256666 45259616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3051 32 702 B3 DNA Binding Superfamily AT4G30080 55.490 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal1g3051 B3 3.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3051 - - gmx:100796522 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2841 1 40361260 40363731 Mal1g3051 1 45256666 45259616 ECH
Mal3g4198 3 120912481 120914824 Mal1g3051 1 45256666 45259616 ECH
Mal1g3051 1 45256666 45259616 Mal1g2841 1 40361260 40363731 ECH
Mal1g3051 1 45256666 45259616 Mal1g3051 1 45256666 45259616 ECH
Mal1g3051 1 45256666 45259616 Mal7g2085 7 74666843 74670270 ECH