Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3035 ATGGGTAATATAGGAAGTAGCGGTTCTAACAATCGTCGGAGACATGGTGGCGGTGGAAGTGGCCGGCGAGTTCATCCACCGGCAACTCCTCCTCCGCCACCGGAAGCTGCGGGTAACCGATTCGTTTACCCTGCTGCTGCTACGCAGTATCAGAATTACCCTAATAATTACCCTAATTACTATCCTCCGCCGCCGGGTACTGTTCCGATGCCGTTGCCGGCGCCGTATGACCATCATCATCGTCCGGCGATGGACCCAATGTGGGGGAGGTATCAGCAGCCGGTGCCGGCACCGGCGCCGTATGTGGAACCTCAGAAAGCGGTTACGATAAAGAATGATGTTAGCATCAAGAAGGAGACACTGAGGATTGAGCCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTACTTTTACGTTTGATGCTGCTGTTTCTGGAAGCATTACCGTACTTTTCTTTGCAAAAGAAGGCGACGGTTGTGTCCTTACCTCGACGAAGGAAAATGTACTTGCACCTGTCACTATAAATTTCCAGCAAGGTCTTGGTCAGAAGTTTAGACAGCCAGTTGGAACTGGTATAAGTTTTTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGGCGACGTGGACGTGTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGCATCGAGGACGGATCAAATGAAACTCCAGCATCTGGTACTAAAACAAATACAAACAACTCTCAGATAACTCAAGCAGTATTTGAGAAGGACAAAGGAGAATTTCGTGTTAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTAGAGAGTGATTTGGATGGGAATGATCCCGGAAAAGAGTGTGTTATCTGCTTATCAGAACCTCGTGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGCTCCAAACAAATAGATGTCCTATTTGCAGACAACCAGTTGAGCGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAACCTGAGGCGTGA 1068 0.4766 MGNIGSSGSNNRRRHGGGGSGRRVHPPATPPPPPEAAGNRFVYPAAATQYQNYPNNYPNYYPPPPGTVPMPLPAPYDHHHRPAMDPMWGRYQQPVPAPAPYVEPQKAVTIKNDVSIKKETLRIEPDEENPGQFLVTFTFDAAVSGSITVLFFAKEGDGCVLTSTKENVLAPVTINFQQGLGQKFRQPVGTGISFSMFEESELLKVGDVDVYPVAVKADASSGIEDGSNETPASGTKTNTNNSQITQAVFEKDKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRLQTNRCPICRQPVERLLEIKVGPEPEPEA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3035 355 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Mal1g3035 355 PANTHER MAHOGUNIN 1 352 IPR045194 GO:0061630
Mal1g3035 355 Pfam Zinc finger, C3HC4 type (RING finger) 295 341 - -
Mal1g3035 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 352 - -
Mal1g3035 355 MobiDBLite consensus disorder prediction 223 241 - -
Mal1g3035 355 MobiDBLite consensus disorder prediction 1 39 - -
Mal1g3035 355 MobiDBLite consensus disorder prediction 221 241 - -
Mal1g3035 355 SMART ring_2 297 335 IPR001841 -
Mal1g3035 355 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 296 336 IPR045195 -
Mal1g3035 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 346 IPR013083 -
Mal1g3035 355 SUPERFAMILY RING/U-box 296 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3035 Mal-Chr1 44621089 44647832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3035 98 316 C3H Transcription Factor Family AT3G09770 64.444 6.63e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3035 - - gmx:100789032 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3035 1 44621089 44647832 Mal1g3035 1 44621089 44647832 ECH
Mal3g4190 3 120769085 120773866 Mal1g3035 1 44621089 44647832 PCT