Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g3025 ATGTTTGGGGGAACTTCCACAGGTGTATTTGGCGTAGATCAAACACCGTCCCCCTTCTCTTCCAGTAATACTTTTGGCGCTTCGTCTTCAACTCCAACTTTTGCTTTTCGTCAGTCATCGAACCTGTCTGGCTCCTCTCAGTCAGTCTTTGGGCAGCAGAACAATTCAAGCAACAATCATTTTGGTCATAAGCCATTTGGTAGTCCAACTCCATTTGAATCGGGAACCGGTAATTCCATGTTTGAGGGTACTTCCGCAGGTGTATTTAGCGCAGCTCAAAAACTGTCTCGATTCTCTTCCAGTACTACATTCGGCGCTTCGTCTTCAACTCCAACTTTTGGTAATTCATCATCCCCGTCTGGCTCCTCTCAATCAGTGTTTGGGCAGCAGAACAATTCAAGTAACAATCCTTTTGCTACTAAACCATTTGCTAGTCCAACTCCATTTGAATCGGAAACGAGTAATTCCATGTTTGGGGGAACTTCCACAGGTGTATTTGGCGCAGCTCAAACACCGTCCCCCTTCTCTTCCACTTTTCGTCAGTCATCGAACATGTCTGGCTCCTCTCAGTCAGTCTTTGGGCAGCAGAACAATTCAATTAACAATCTTTTTGGTCCTAAGCCATTTGGTAGTCCAACTCCATTTGGATCGGAAACGGGTAATTCCATGTCTGTGGGTACTTCCTCATGTGTATTTGGCCCAGCCCAAACACCAACTCTCTTCTCTTCCAATACTATTTTCGGCGCTTCGTCTTCAACTCCAGCTCTTGGTAATTCATCGTCGTTATTTGACGGTAGGTTTTTCAACAGAATCCTTTTGATATTTTTCCATTTATTAATATTCTTGCTCTCATTATATTGCCTTCATTGGAGCCTTGGAAACCAGTTTATTATATATTATTATATTTTGCAGTTTTCTAATTCTATCTTAAACCAACTCTCTTCCTTCGCAGGATCATCAATCTTTGGTCGCGAGCCTGCTTTAGGAGGTTTTGGCTCTACTCCTACTCAAACAAGTCCTTGTAGAACTGCCATCCAACCATCACAACCAGCATTTGGAAGTAACGCTGGTTTCATGATTGTTGATCGTGCTTCACAATATGGTTCTTTGAATGTACATGATCAATATAGGGAAATGCGGATGGACATAAACAGCATGAGCTATGAGGAACTACTCGCACTTGGAGAGAGGATCGGCAATGTGGGCACAGGATTATCTGAGGATTTGATTTCTAAGTATTTGACAAAAACACTGTACTCTTCATCTGAGCAAAGTCAAGAAGGAAATTGTGCAATTTGTCTGGAAGAATACATGAACATGGACGATATTGGGACGCTGAAAACTTGTGGACATGACTACCATATGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACGTGTGTCCCATATGCAAAGCTTCTGCTTTGTCTGATGAGTGA 1440 0.425 MFGGTSTGVFGVDQTPSPFSSSNTFGASSSTPTFAFRQSSNLSGSSQSVFGQQNNSSNNHFGHKPFGSPTPFESGTGNSMFEGTSAGVFSAAQKLSRFSSSTTFGASSSTPTFGNSSSPSGSSQSVFGQQNNSSNNPFATKPFASPTPFESETSNSMFGGTSTGVFGAAQTPSPFSSTFRQSSNMSGSSQSVFGQQNNSINNLFGPKPFGSPTPFGSETGNSMSVGTSSCVFGPAQTPTLFSSNTIFGASSSTPALGNSSSLFDGRFFNRILLIFFHLLIFLLSLYCLHWSLGNQFIIYYYILQFSNSILNQLSSFAGSSIFGREPALGGFGSTPTQTSPCRTAIQPSQPAFGSNAGFMIVDRASQYGSLNVHDQYREMRMDINSMSYEELLALGERIGNVGTGLSEDLISKYLTKTLYSSSEQSQEGNCAICLEEYMNMDDIGTLKTCGHDYHMSCIRKWLSMKNVCPICKASALSDE* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g3025 479 MobiDBLite consensus disorder prediction 105 192 - -
Mal1g3025 479 MobiDBLite consensus disorder prediction 37 79 - -
Mal1g3025 479 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 477 IPR045191 GO:0061630
Mal1g3025 479 Pfam Ring finger domain 429 472 IPR001841 -
Mal1g3025 479 MobiDBLite consensus disorder prediction 37 64 - -
Mal1g3025 479 SMART ring_2 430 471 IPR001841 -
Mal1g3025 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 478 IPR013083 -
Mal1g3025 479 ProSiteProfiles Zinc finger RING-type profile. 430 472 IPR001841 -
Mal1g3025 479 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 117 477 - -
Mal1g3025 479 SUPERFAMILY RING/U-box 416 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g3025 Mal-Chr1 44350039 44352230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g3025 342 478 C3H Transcription Factor Family AT2G37150 53.741 1.15e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g3025 - - aprc:113871176 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3025 1 44350039 44352230 Mal1g3025 1 44350039 44352230 ECH
Mal3g4177 3 120549599 120552663 Mal1g3025 1 44350039 44352230 PCT