Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2978 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGATAAAGAAGAAATTGGAGGAAGTGCAGGACATGCGTGATGCTGCGATCAAAGCCAACCCAGGGAAATTGAAGAAAAATTCATCTATGAATTCCAGAAATTCCTCTAAAAATGGAGACTCCGGGCACATTGCTGCACAAACATTCCCTTTCCGTGAGTTAGCAACCGCTACTAGAAATTTTAGAGCAGACTGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCATTTGGAAACTATTAATCAGACCGTTGCAATTAAGCAACTTGACCGAAATGGACTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTCGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTGGGATCCTTGGAAGACCACTTACATGATGTTTCTCCTGGCAAGAAACGACTTGACTGGAGCACGAGAATGAAAATAGCTGCTGGGGCAGCAAAAGGGTTAGAATATCTGCATGACAAAGCTAACCCTCCTGTTATATACCGAGATTTAAAGTGCTCGAACATTTTGCTTGGTGAAGGGTATCATCCCAAGTTATCTGATTTTGGTTTGGCTAAAGTTGGCCCTGTGGGGGAAAACACTCATGTATCAACAAGGGTTATGGGTACCTATGGATATTGTGCTCCGGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATGTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTCACACAGATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGATATACCAAGCCCTTGCCGTTGCAGCAATGTGTGTTCAGGAACAGGCAAATATGCGTCCAGTTATAGCTGATGTGGTGACAGCTCTTAGTTACCTTGCTTCACAGAGATATGAGCCCAATACGCAGACGGTACAAAGCTCTCGCCTCGGTCCTGGTACTCCTCCTCGAACCAGGAGGGGAGTTTGA 1146 0.4354 MGWIPCSGSSNTKKKIKKKLEEVQDMRDAAIKANPGKLKKNSSMNSRNSSKNGDSGHIAAQTFPFRELATATRNFRADCLLGEGGFGRVYKGHLETINQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVSPGKKRLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYEPNTQTVQSSRLGPGTPPRTRRGV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2978 381 MobiDBLite consensus disorder prediction 361 381 - -
Mal1g2978 381 Gene3D Phosphorylase Kinase; domain 1 41 151 - -
Mal1g2978 381 CDD STKc_IRAK 81 349 - -
Mal1g2978 381 Pfam Protein tyrosine and serine/threonine kinase 80 348 IPR001245 GO:0004672|GO:0006468
Mal1g2978 381 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2978 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 379 - -
Mal1g2978 381 PANTHER OS07G0668900 PROTEIN 1 379 - -
Mal1g2978 381 Coils Coil 13 33 - -
Mal1g2978 381 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Mal1g2978 381 Gene3D Transferase(Phosphotransferase) domain 1 152 369 - -
Mal1g2978 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Mal1g2978 381 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2978 381 MobiDBLite consensus disorder prediction 27 57 - -
Mal1g2978 381 SUPERFAMILY Protein kinase-like (PK-like) 61 362 IPR011009 -
Mal1g2978 381 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2978 Mal-Chr1 43237280 43241519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2978 32 354 Glycoside Hydrolase AT3G07070 66.873 1.08e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mal1g2978 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2978 - - gmx:100776041 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0004 1 64377 68811 Mal1g2978 1 43237280 43241519 ECH
Mal1g2978 1 43237280 43241519 Mal1g2978 1 43237280 43241519 ECH
Mal3g4142 3 120161579 120164239 Mal1g2978 1 43237280 43241519 PCT