Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2969 ATGGAAGAAACAACATCAACCATCATGGCAGCACTTTCATCTCTCCCTCCTCCCCACCTCACAAACCTCACTAACACCATTCTCTCATCCACCCGCCGTCACCACCACCGTCTCACTTTCCTCCTCTCCTCCCCATCTCTCTTCTCTCTAACCCTCCGCCACCTCCACACTCTCTCTCTCCAACAAAAAACTCTCCTCATTTCACGCCACCTCCTTTCTTCTCTCCACCTCCTTACCCAATCCACTTCACCTCTTCCACCTCCTCTCTCAACCTCCATGCGCGACCGTGACACCGACGCCGTGTTACTCCTTCTCTTGTTCTGTGAAACACATAAACACAACCCACAAGCTTTAAACGCACCGTTTTCACACTGGAGACTAAACTTGAACAAAATCTTCTCCAACACATTGTTAACGCTTTGTTACTCTTCAGCACCACCGCTTGGTGCATGTTTTGGATCGGTTTTGATTCCGTTTATTGACACGGTGAGTCGGTGTTGGAGACTGGTGGGTGTTTTGGGTTGTGAAGAAGGGAAGGAAGTGAAAGAGGTGGCGGCTTCGGCGGCGACGGTGGTGGCTTTACCGGCGGTGGAGATGAGTGTTGGAGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTGCCATGGTTAGGGAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCTGATGATGTTTTTGGAGAGATCCAACGGTTGTGGGAAGTCTTGGTTAAAATTGGTGCTAAACATAATAGGAATGATTTGATTAATTAA 843 0.4852 MEETTSTIMAALSSLPPPHLTNLTNTILSSTRRHHHRLTFLLSSPSLFSLTLRHLHTLSLQQKTLLISRHLLSSLHLLTQSTSPLPPPLSTSMRDRDTDAVLLLLLFCETHKHNPQALNAPFSHWRLNLNKIFSNTLLTLCYSSAPPLGACFGSVLIPFIDTVSRCWRLVGVLGCEEGKEVKEVAASAATVVALPAVEMSVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGAKHNRNDLIN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2969 280 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Mal1g2969 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 258 IPR013083 -
Mal1g2969 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 272 - -
Mal1g2969 280 SUPERFAMILY RING/U-box 202 252 - -
Mal1g2969 280 SMART ring_2 206 246 IPR001841 -
Mal1g2969 280 Pfam Ring finger domain 205 247 IPR001841 -
Mal1g2969 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2969 Mal-Chr1 43110738 43111580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2969 2 273 C3H Transcription Factor Family AT5G02750 47.887 6.93e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2969 - - pvu:PHAVU_007G161400g 324.324