Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2953 ATGGGTAACACACACGGACATCATCATCGCAAACACCGTTTTTCTGTTCCTCACAACACGGTTCCAACACCACCTTATAAATACCAAAACTCTCAGAATTCTAATAATCCACCAAACCAAAACCAAGGTAGCTCCAATTCCAACATCATCACCATGACCTCTTTGCCTTACGCCAACGCCGACATCTCTCTCCGTTCCCTCGCATCTCAAGCTGAAGGCTTTGGCCGCTGCGCTATCGGTGGTCTTCATGGTCTCGTTCACCATGTCACATCACTCTTAGATGATGGACCGGGATCATTGCGTGATGCGTGTCGCAAAAAAGAGCCTTTGTGGATTGTTTTTGAGGTATCCGGTACTATTCATCTTTCGTCTTACTTGAGTGTGTCGTCACACAAGACCATTGATGGAAGGGGCCAAAAGATTAAGCTGACTGGAAGGGGGCTTAGGCTGAAGGAATGTGAACACGTAATCATTTGTAATTTAGAAATAGAAGGAGGCAGAGGACCTGATGTTGATGCTATTCAGATCAAACCTAATTCAAAACATATATGGATAGATCGTTGCACTTTGAGTGATTTTGAAGATGGGCTCATTGATATCACTCGAGGAAGCACTAATATTACTATTTCAAGGTGTCACTTTCATCAGCATGACAAAACAATACTCATTGGATCAGATCCCAAACATGTTGATGATAGATGCATGAAGGTCACCATACACCACTGTTTTTTCAACGGTACTCGACAGAGGCATCCTCGTGTTAGGTTTGCAAAAGTACATCTGTACAATAATTACTCCAGAGATTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCACAACATAATATCTATGAAGCTGGCCAGAAGAAGGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGTCACATAATATCGGAAGGAGACTTGTTTCTAAACGGTGCTCAACCAGGGTTGATGACAGAGGATGTTGGGTGTAACAAGTTTCATCCCAGTGAACACTATGACACATGGACAGTGCAACCTCCTACAGATGATCTAAAGCAAGTTCTTCATCACTGTACTGGATGGCAATCTGTTACGAGGCCAGCGGATCAAGCTGTTTGCGCAGAATAG 1152 0.4349 MGNTHGHHHRKHRFSVPHNTVPTPPYKYQNSQNSNNPPNQNQGSSNSNIITMTSLPYANADISLRSLASQAEGFGRCAIGGLHGLVHHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQKIKLTGRGLRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTNITISRCHFHQHDKTILIGSDPKHVDDRCMKVTIHHCFFNGTRQRHPRVRFAKVHLYNNYSRDWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKEAEATGHIISEGDLFLNGAQPGLMTEDVGCNKFHPSEHYDTWTVQPPTDDLKQVLHHCTGWQSVTRPADQAVCAE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2953 383 Gene3D - 48 364 IPR012334 -
Mal1g2953 383 Pfam Pectate lyase 125 288 IPR002022 -
Mal1g2953 383 MobiDBLite consensus disorder prediction 22 49 - -
Mal1g2953 383 PANTHER PECTATE LYASE 50 375 - -
Mal1g2953 383 MobiDBLite consensus disorder prediction 1 16 - -
Mal1g2953 383 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Mal1g2953 383 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Mal1g2953 383 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Mal1g2953 383 PANTHER PECTATE LYASE 18-RELATED 50 375 IPR045032 GO:0030570
Mal1g2953 383 SUPERFAMILY Pectin lyase-like 69 376 IPR011050 -
Mal1g2953 383 MobiDBLite consensus disorder prediction 1 49 - -
Mal1g2953 383 SMART amb_all 97 295 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2953 Mal-Chr1 42800027 42803437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2953 92 380 Polysaccharide Lyase AT3G55140 73.010 3.41e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2953 K01728 - gmx:100814368 624.009