Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2952 ATGAATGCAGATGACGAACCAGGATCATTGCGTGATGCGTGTCGCAAAAAAGAACCTTTGTGGATTGTTTTTGAGGTTTCTGATCGTTGCATCACTCGAGGAAGCACTGATATTACTATTTCAAGGTGTCACTTTCATCAGCATGACAAAACAATACTCATTGGATCAGATCCCAAACATGTTGATGATAGATGCATGAAGGTCACCATACACCACTGTTTTTTCAATGGCACTCGACAGAGGCATCCTCGTATATTCTCACAACATAATATCTATGAAGCTGGCCAGAAGAAGGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGAAGCTGAAGCAACTGGTCACATAATATCAGAATGA 369 0.4092 MNADDEPGSLRDACRKKEPLWIVFEVSDRCITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKVTIHHCFFNGTRQRHPRIFSQHNIYEAGQKKVAFKYLHEKAADKEAEATGHIISE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2952 122 PANTHER PECTATE LYASE 18-RELATED 85 122 IPR045032 GO:0030570
Mal1g2952 122 PANTHER PECTATE LYASE 18-RELATED 31 85 IPR045032 GO:0030570
Mal1g2952 122 PANTHER PECTATE LYASE 18-RELATED 3 28 IPR045032 GO:0030570
Mal1g2952 122 PANTHER PECTATE LYASE 3 28 - -
Mal1g2952 122 PANTHER PECTATE LYASE 31 85 - -
Mal1g2952 122 PANTHER PECTATE LYASE 85 122 - -
Mal1g2952 122 Gene3D - 26 109 IPR012334 -
Mal1g2952 122 SUPERFAMILY Pectin lyase-like 6 103 IPR011050 -
Mal1g2952 122 Pfam Pectate lyase 31 85 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2952 Mal-Chr1 42795573 42797546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2952 4 27 Polysaccharide Lyase AT3G55140 70.833 4.81e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2952 K01728 - twl:119999119 149.058