Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2939 ATGATGAAGAGACAGAGAGAAAACGAAGAAAAAGAGAGCATGGATTTAGCAACAAGTCTAATGCTACTCTCTTCACGTACTCATCAAAGCAAAACAGTTGAGTTTGAGTGCAAAACTTGCAACCGCAAATTCTCATCTTTTCAAGCACTAGGTGGTCATAGGGCAAGTCACAAGAAGCTGAAAATCGATTCAGAAGAAGCACAAAAAGGGAATACTAATAATAATAAGCCAAAAATGCATGAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGAATTAATAATGAAGGGTTTTCATCTTCTTCAATAAATTATCAAGTGATTGCAAAATCTTCTCCTGTTTTGAAAAGATCTAATAGTAAGAGAATTATGATCTTGGAATTGGATTTGAATTTGACACCTTTGGAAAATGACTTGAAGTTGTTGTTTGGAAATAAGGCACCTAAAGTGGATATTTCTTTGTTCTGA 501 0.3493 MMKRQRENEEKESMDLATSLMLLSSRTHQSKTVEFECKTCNRKFSSFQALGGHRASHKKLKIDSEEAQKGNTNNNKPKMHECSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYQVIAKSSPVLKRSNSKRIMILELDLNLTPLENDLKLLFGNKAPKVDISLF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2939 166 Gene3D Classic Zinc Finger 32 102 - -
Mal1g2939 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Mal1g2939 166 MobiDBLite consensus disorder prediction 55 75 - -
Mal1g2939 166 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Mal1g2939 166 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Mal1g2939 166 SUPERFAMILY beta-beta-alpha zinc fingers 35 102 IPR036236 -
Mal1g2939 166 SMART c2h2final6 80 102 IPR013087 -
Mal1g2939 166 SMART c2h2final6 35 57 IPR013087 -
Mal1g2939 166 Pfam C2H2-type zinc finger 80 103 - -
Mal1g2939 166 Pfam C2H2-type zinc finger 35 59 - -
Mal1g2939 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Mal1g2939 166 PANTHER ZINC FINGER PROTEIN ZAT5 2 160 - -
Mal1g2939 166 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2939 Mal-Chr1 42487360 42487860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2939 2 163 C2H2 Transcription Factor Family AT2G37430 46.961 9.40e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g2939 zf-C2H2_6 1.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2939 - - aprc:113870747 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4009 3 118602219 118602725 Mal1g2939 1 42487360 42487860 PCT