Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2938 ATGATAAAGAGACAGAGAAAAAACGAAGAAAAAGAGAGCATGGATTTAGCAACAAGTCTAATGCTACTCTCTTCACGTACCCAACAAAGCAAAACAGTTGAGTTTGAGTGCAAAACTTGCAACCGCAAATTCTCATCTTTTCAAGCACTAGGTGGTCACAGGACAAGTCACAAGAAGATGAAAATCGATTCAGAAGATGCACGCAAAATGAATATTAATAATAATAAGGCCAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGAATTAATAATGAAGGGTTTTCATCTTCTTCAATAAATTATCAAGTGATTGCAAAATCTTCCCCTGTTTTGAAAAGATCGAATAGTAAGAGAATTATGATCTTGGAATTGGATTTGAATTTGACACCTTTAGAAAATGACTTGAAATTGTTGTTTGGAAACAAGGCACCTAAAGTAGATATTTCTTTGTTGTAA 501 0.3413 MIKRQRKNEEKESMDLATSLMLLSSRTQQSKTVEFECKTCNRKFSSFQALGGHRTSHKKMKIDSEDARKMNINNNKAKMHKCSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYQVIAKSSPVLKRSNSKRIMILELDLNLTPLENDLKLLFGNKAPKVDISLL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2938 166 SMART c2h2final6 35 57 IPR013087 -
Mal1g2938 166 SMART c2h2final6 80 102 IPR013087 -
Mal1g2938 166 Pfam C2H2-type zinc finger 80 103 - -
Mal1g2938 166 Pfam C2H2-type zinc finger 35 59 - -
Mal1g2938 166 Gene3D Classic Zinc Finger 32 102 - -
Mal1g2938 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Mal1g2938 166 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Mal1g2938 166 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Mal1g2938 166 SUPERFAMILY beta-beta-alpha zinc fingers 35 102 IPR036236 -
Mal1g2938 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Mal1g2938 166 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
Mal1g2938 166 PANTHER ZINC FINGER PROTEIN ZAT5 2 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2938 Mal-Chr1 42457592 42458092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2938 2 166 C2H2 Transcription Factor Family AT2G37430 45.652 2.24e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g2938 zf-C2H2_6 3.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2938 - - aprc:113870747 208.379