Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2891 ATGAATCCAATTGGAAATTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTGGCCCCTCCTGGGAATGGATTACAGACAAATTTGTCCTCAGGTCCTTCTGCTTTCTTTGGGGTCGGCATTGAAACACCTTTCAAAGAAATAATCCAACCCTCTCTTACTCAGTCTGTGATTATGGGTGAACTTAACAAAGATATTAAGATCACTGATCAGGAAACAAGTAAACTTCAAGATTGGGATCCCAGCGTGGTGTTGAATAACCTGTCATTCCTGGAAGACAAGATTCATCAGCTCCAGGATCTTGTGCGTTTGATTGATAATAAGAAGTGCCAACCTTTTGAACAACCTCGTGAACTTGTGACTCAGGAGCAGCAGCTCATCACAGCTGATTTAACATCAATTATTGTTCAGTTGATCTCTACTGCTGGTAGCCTTCTCCCTTCTGTCAGGAACACCGTTACAAACACAAGTCCGTTGATTGGACAGCTTAGCCAGCTTCCTGGGATTAACCTTCCTTTTGGAATAGGCACAAGTAGTGGTATTGAGCCACAAAATTATAGTGGAAACAAATTGTTTGATCATTCCATTCAGAATGATGTACCTAATAATTGTGAAATGGAGCAAAACCATAACATGGAAGAACATGAACATAAAGATGAAGAAGATATGGAAGAGGGAGAGAATCTTGCACCTGGTTCATATGAGATTTTACAACTGGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATATGTGGCAAGGGTTTCAAGAGGGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAACCACACAAAGAAACTGGGTCGGAACCAAAGCTTATCAAGAGGTATTCGTGTCCCTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGCGTCAAAAATCACTACAAAAGAACTCATTGTGATAAGAGTTACACTTGCAGCAGATGCCATACAAAGAAGTTTTCAGTCATGGCAGATCTCAAAACTCACGAGAAACACTGTGGCAAGGATAAATGGCTCTGCTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGAAGAAAACAAAGCATCTGCCGAGCCACCTGATCGATGTGACACCAGAGAAAATAGTGCTATGGCAGGAAGCAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGCAGTTGATAGCATCATGGATGTGAAAGGTAATATTGATGATCCTATCAATTACTTTTCATCTTTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTACTGAATTCTCCCAACCTCCATTTGAAGATACAGAAGCCTCTTTCTCTTTTCTCATGCCGGGTTCGTTTAATTATGCTCCTAAATCTGGTGGTGAATCATGTTCTGACATTCTGTAA 1506 0.4124 MNPIGNLCANNWARSSSLAPPGNGLQTNLSSGPSAFFGVGIETPFKEIIQPSLTQSVIMGELNKDIKITDQETSKLQDWDPSVVLNNLSFLEDKIHQLQDLVRLIDNKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGSLLPSVRNTVTNTSPLIGQLSQLPGINLPFGIGTSSGIEPQNYSGNKLFDHSIQNDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEENKASAEPPDRCDTRENSAMAGSNFCFGSNPSSENAVDSIMDVKGNIDDPINYFSSLNFEGCNFGGFTEFSQPPFEDTEASFSFLMPGSFNYAPKSGGESCSDIL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2891 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Mal1g2891 501 Gene3D Classic Zinc Finger 234 303 - -
Mal1g2891 501 SUPERFAMILY beta-beta-alpha zinc fingers 248 275 IPR036236 -
Mal1g2891 501 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 485 IPR044300 GO:0010044|GO:0010447
Mal1g2891 501 Coils Coil 88 108 - -
Mal1g2891 501 SMART c2h2final6 337 359 IPR013087 -
Mal1g2891 501 SMART c2h2final6 250 272 IPR013087 -
Mal1g2891 501 SMART c2h2final6 299 332 IPR013087 -
Mal1g2891 501 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Mal1g2891 501 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2891 Mal-Chr1 41340473 41341978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2891 218 499 C2H2 Transcription Factor Family AT1G34370 70.486 4.17e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g2891 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2891 - - gmx:100170687 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2891 1 41340473 41341978 Mal1g2891 1 41340473 41341978 ECH