Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2886 ATGTCTGGCAACTCAAGTTGCACCATTTACATAGGCAATCTGGATGAGAGGGTGACAGATAGGATCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAAACTGAAAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACCGAGGAGATTGCAGACTATGCTGTCAGACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACCCTGAAGTTTGCGATATCTGGAAGGGACAAAAATACCCCAAATAGTTCTACAGCTACTACACCCACGTCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGCATTCCACTAGGCAATCAATACCTGACCGATTCTCCGATCGTGCGGTTAATTATTCTCAAGCTCCTCCTTCTCATCATCGTGCTACTGACCAAATTAATGCGTATGGATCTCACTTTGGTGGTAACCATATGGACTACAGTCGGAGAGCTTTTGGGGAGGAATTGGATAACGCTAGCCGTTCCACGCCGCCCTGA 558 0.4337 MSGNSSCTIYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKETEKPKGFAFAEYETEEIADYAVRLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQHSTRQSIPDRFSDRAVNYSQAPPSHHRATDQINAYGSHFGGNHMDYSRRAFGEELDNASRSTPP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2886 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Mal1g2886 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Mal1g2886 185 Gene3D - 2 96 IPR012677 -
Mal1g2886 185 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 182 - -
Mal1g2886 185 PANTHER OS01G0876500 PROTEIN 1 182 - -
Mal1g2886 185 SMART rrm1_1 8 82 IPR000504 GO:0003723
Mal1g2886 185 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Mal1g2886 185 MobiDBLite consensus disorder prediction 154 185 - -
Mal1g2886 185 MobiDBLite consensus disorder prediction 85 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2886 Mal-Chr1 41233365 41236080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2886 5 87 Eukaryotic Initiation Factors Gene Family AT1G49760 30.120 8.13e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2886 K12831 - gmx:100784532 296.204