Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2885 ATGATCAAATGTTTCACTCATGATACCAAGTTCTGCAAAATTATTGATGAAGAATGCCTTCGAAATGACGATTTGATGATTACAGCTTTGAGTCGTAAATTTTGGGATGATATTTCTAGCCCAATATGTCTTAAGCTTCCCGATAGATGCACATGGCTACTGCACTGGAAACAGCATGATGATACTCATGTGCTATTAAACAAGTGGAAGAGATTTGCTGAAGCTTATTCTTTGAAGCATAATCAAGTTTTGCTTTTCAAATATGTTGATGATTCATATCCCATCAGCATGTTTAGGGTTTCCATATTTGATCAAACTGGCACTGAAATTGGTTACCCCACGTTCTGCTCCGTATTTTCCCCATGGGAAACCAAAACAACAAAACCTGCAGTACCAACAAGATGTTCTATTCTTCATCCTCCCAAGAAAATTAAAACCAACCCAAAACAGGAGGACCCTAAAGGCAGTGGATCAACTCCTTCTCAAATGACAAAGCCTAAAAATAGAGGTACAAGAGAAGTTCCCTATAACACTAGGGGATCCTCAACTATTAATCAAAGCGTGGCTTTAGAAGAAGATATTGAATGTAGCAGTCGTGCATTCGAGAGAGCCAAGGCTACAGTATCTTGCCTCACTAACAACCCCTACTTCATTCGTCAAATGCGCCCATCATACATTCAAAGAAATGTGCTCGCCTTACCACCCAACTTCTTAACAACACATCAACTTACGGAGGAGGATGAGAGTGCTATTCTTTTGATTTCTAAGCACAGACATTGGAATGTCAAGCTAAAGCTTAATACTTGCAATGGACAAATAATATCTATTCAGGCTGGTTGGAAGAATTTTGTTACGGACAATAAATTGAAACTAGGTGATGTATGTCTTTTTGAGCTACTTAAGTCAACAGGAACACTTATGTTTAGAGTTTATATTTTCCGTGCAAGAGAACAATCAAGCCCTCCTCACATTCAAGCAGGACATACCGGTTGA 993 0.3887 MIKCFTHDTKFCKIIDEECLRNDDLMITALSRKFWDDISSPICLKLPDRCTWLLHWKQHDDTHVLLNKWKRFAEAYSLKHNQVLLFKYVDDSYPISMFRVSIFDQTGTEIGYPTFCSVFSPWETKTTKPAVPTRCSILHPPKKIKTNPKQEDPKGSGSTPSQMTKPKNRGTREVPYNTRGSSTINQSVALEEDIECSSRAFERAKATVSCLTNNPYFIRQMRPSYIQRNVLALPPNFLTTHQLTEEDESAILLISKHRHWNVKLKLNTCNGQIISIQAGWKNFVTDNKLKLGDVCLFELLKSTGTLMFRVYIFRAREQSSPPHIQAGHTG* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2885 330 Pfam B3 DNA binding domain 218 314 IPR003340 GO:0003677
Mal1g2885 330 CDD B3_DNA 11 104 IPR003340 GO:0003677
Mal1g2885 330 Gene3D - 195 318 IPR015300 -
Mal1g2885 330 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 315 - -
Mal1g2885 330 Gene3D - 5 107 IPR015300 -
Mal1g2885 330 SMART B3_2 11 101 IPR003340 GO:0003677
Mal1g2885 330 SMART B3_2 217 316 IPR003340 GO:0003677
Mal1g2885 330 ProSiteProfiles B3 DNA-binding domain profile. 216 316 IPR003340 GO:0003677
Mal1g2885 330 MobiDBLite consensus disorder prediction 132 181 - -
Mal1g2885 330 MobiDBLite consensus disorder prediction 151 168 - -
Mal1g2885 330 CDD B3_DNA 215 314 IPR003340 GO:0003677
Mal1g2885 330 PANTHER B3 DOMAIN-CONTAINING 8 315 - -
Mal1g2885 330 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Mal1g2885 330 SUPERFAMILY DNA-binding pseudobarrel domain 28 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2885 Mal-Chr1 41227971 41229567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2885 1 317 B3 DNA Binding Superfamily AT3G18990 24.860 7.96e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g2885 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2885 - - mtr:MTR_1g098450 315.849