Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2844 ATGCCAAAAAAAATCATCCATTCCACTCCACCACAAACCACCATAACAACGACGGTGCAATCAGAACTGAAAATATATTGGTGCCACGAATGTGACATGAGTGTCTCTCTCATTTCTTCTCCAACTCCTTCTCCCCTACTATGTCCACATTGTCACACCCATTTCCTTGAACTAATGGACTCACCTTTTCCCCAAAACGACGCCGAATCGCTTGTATCTTCTTCCCGCTTCAACGATTTTTTTGAAGAAGCACTTTTACTATTCTCACCCCCTCCCACCAAAACTCACACTGAAACAATCATCCCTACAATAACCGTCACCCCAACACTCCTCTCTACCCTCGACGCAAACGGCGTTGTTTCATGCGCCGTTTGTACAGAAGCAATCTCCGTTGACGAAGAAACCAAACAACTACCATGCAATCATCTCTACCATTCTGTTTGCATTACTCCGTGGCTCCATCGCCGATCTTCTTGTCCTCTGTGCCGCTTCAGAATCAACGACAATGACGGAGAAGATGAAGATGTTGATGCTGCTACTGTGATGAGGCGGATGGTGCCGCAACTGTTGGAGTTGTCGGAAGATGATGATGATTTCTATGGATTGAGAATCACTCTCAATAACATTGCTTCCCGTCATGCTTCCGTCGCCGGCGAGATATCTGCTACAAATGGTGAACCCGGTGGTGGCGGTGTAGATGGAGAATCTTCATGCTGA 717 0.4658 MPKKIIHSTPPQTTITTTVQSELKIYWCHECDMSVSLISSPTPSPLLCPHCHTHFLELMDSPFPQNDAESLVSSSRFNDFFEEALLLFSPPPTKTHTETIIPTITVTPTLLSTLDANGVVSCAVCTEAISVDEETKQLPCNHLYHSVCITPWLHRRSSCPLCRFRINDNDGEDEDVDAATVMRRMVPQLLELSEDDDDFYGLRITLNNIASRHASVAGEISATNGEPGGGGVDGESSC* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2844 238 Pfam Ring finger domain 121 163 IPR001841 -
Mal1g2844 238 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Mal1g2844 238 CDD RING-H2_PA-TM-RING 122 163 - -
Mal1g2844 238 SUPERFAMILY RING/U-box 121 168 - -
Mal1g2844 238 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 20 91 - -
Mal1g2844 238 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 86 180 - -
Mal1g2844 238 Pfam zinc-ribbon 26 59 IPR039525 GO:0061630
Mal1g2844 238 SMART ring_2 122 162 IPR001841 -
Mal1g2844 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 20 91 - -
Mal1g2844 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 180 - -
Mal1g2844 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2844 Mal-Chr1 40443949 40444665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2844 13 174 C3H Transcription Factor Family AT2G44330 33.129 5.38e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2844 K11982 - gmx:100775530 201.06