Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2841 ATGTTTGTGGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGTTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATAACAAAGTAGATTTTTCCAAAACACGTGTTCCACCTCTCATCCCTTGTAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACTGATGAAGTCTATGTCAAAATGAGATTAACACCTTTAAGAGAAAATGAATTGGATTTAGAAGAAGATTGTTTCTTTGGAAACAATAATGGCTTAGAGGGTCATGAAAAACCAGCTTCTTTTGCAAAGACATTAACACAATCTGATGCAAACAATGGTGGTGGTTTTTCTGTTCCTAGATATTGTGCTGAGACTATTTTTCCTAGATTGGATTACTCTGCAGAACCACCTGTTCAAACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGGCATATTTATAGAGGAACACCAAGGAGACATCTTTTGACTACTGGTTGGAGTAATTTTGTGAATCATAAGAAACTTGTTGCTGGTGATTCAATTGTGTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCAAAGAAAGGTGGAATTGGTGGTGGAACTGATCAATTTTCTAACTCTTCTAGTAGTAATTGGAACCGTGTATCACCTTTGTTTGGTGGTGGTTCTGGTTTCTTATGTGGAGGTGAGAATAGAAAAAATGGTGGTGATGATTTGATGGGAAAAATAGGAGCTGAATCTGTTGTTGAAGCTGTAAATTGTGCTGTTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCTTTTGAAACTGAAGATTCTTCTAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAGTGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAATATGCCAAATTTCAATCTCTCACCATTCACACCTCCAAGAAAGAAACCAAGGTTTATTCAAGATCCATATTTTCACCTTATAAATCAACTTCCAATGCCATCATCATCATCATCATCAATCTCCAACATTAATCTTCTCAATTACACAAACTCTTCTCTCTGTAACATTCAAGATACTACTACTAATAGTTCTTTTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACCAAATAATAATCCATCAAATTTAATTCCCTTCAACAAGCTTCTACAACAAGACATGTTTCTTGGTAATGTGTCATTGTCAAGATTTGATCAACAACAAACTATAATTAGGCCTCCTTGTGGACCCTACAAGAGTATCAACAACACTAAGAACAATGTTGATTTGTCTTGTTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAATCCAATATTGAAGCAAAAGCACCCCATAACCATATTTTGTTATTTGGAAAACTCATTCAAACTGAACAGAACAGTTCAAATGTTTCAAAGAGTGGTTCTGTTTCTGAAGGAACTTCTTTGAAAACATCAAATGCTTCTTCTTCTTCTGATCCTGTTGAGAATTCTTCTGATGGAGGGTCTTCTTGGTATAAGGATCAACAACACAAGCCTGATCTTGTTGGAACAGAAAATGTTACTACATTGTGTATGGCTTCATAA 1863 0.3655 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHNKVDFSKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLRENELDLEEDCFFGNNNGLEGHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSSSNWNRVSPLFGGGSGFLCGGENRKNGGDDLMGKIGAESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPSSSSSSISNINLLNYTNSSLCNIQDTTTNSSFASSIQGARHAQFGPNNNPSNLIPFNKLLQQDMFLGNVSLSRFDQQQTIIRPPCGPYKSINNTKNNVDLSCLLSVGNSGQSFKESNIEAKAPHNHILLFGKLIQTEQNSSNVSKSGSVSEGTSLKTSNASSSSDPVENSSDGGSSWYKDQQHKPDLVGTENVTTLCMAS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2841 620 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Mal1g2841 620 SUPERFAMILY DNA-binding pseudobarrel domain 114 220 IPR015300 -
Mal1g2841 620 MobiDBLite consensus disorder prediction 561 598 - -
Mal1g2841 620 SMART B3_2 119 221 IPR003340 GO:0003677
Mal1g2841 620 PANTHER AUXIN RESPONSE FACTOR 16 7 613 - -
Mal1g2841 620 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Mal1g2841 620 CDD B3_DNA 118 219 IPR003340 GO:0003677
Mal1g2841 620 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal1g2841 620 Gene3D - 117 221 IPR015300 -
Mal1g2841 620 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 613 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal1g2841 620 Gene3D - 316 390 - -
Mal1g2841 620 MobiDBLite consensus disorder prediction 561 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2841 Mal-Chr1 40361260 40363731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2841 1 585 B3 DNA Binding Superfamily AT4G30080 54.698 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal1g2841 B3 5.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2841 - - mtr:MTR_1g094960 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2841 1 40361260 40363731 Mal1g3051 1 45256666 45259616 ECH
Mal3g4198 3 120912481 120914824 Mal1g2841 1 40361260 40363731 ECH
Mal1g3051 1 45256666 45259616 Mal1g2841 1 40361260 40363731 ECH
Mal1g2841 1 40361260 40363731 Mal1g2841 1 40361260 40363731 ECH