Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2806 ATGTATTGTGAGGCAGGAGCAATACCGCTTCTCGTAGAGCTGTTGTCTTCCACAGATCCTCGAACTCAGGAGCATGCTGTTACAGCACTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGGAAACAAAGCTAGAGCAGTTAAAGCCGGGATAGTTGCTCCGTTGATGCGATTTATGAAGGATGCAGGCGGTGGGATGGTTGATGAAGCACTAGTGATAATGACAATCCTTACAAGCCATCATGAAGGCAGGACAGCAATCAGTCAGGCTGAGCCGATCCCTATTTTAGTTGAGGTTATACGAACTGGATCTCCATGCAACCGGGAGAAAGCTGCTACTATTTTGTGGTTGGTGTGTGCGAGCGATCAATTGCAAATGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACATCAGGGATTGTCAGAAATGGAACTGATAGAGCTAAGAGAAAAGCTAGAAGTATACTGGAACTGTTACAGGGAATCGAAGGGGAGGATCTTTTGCAAAATTCCTAGCCTTGTGTGTAACTTTATTATTCATAGTTCAAATATAGAATTTGCCTAA 576 0.4323 MYCEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINESNKGTIGNKARAVKAGIVAPLMRFMKDAGGGMVDEALVIMTILTSHHEGRTAISQAEPIPILVEVIRTGSPCNREKAATILWLVCASDQLQMKLAKEHGAEEAHQGLSEMELIELREKLEVYWNCYRESKGRIFCKIPSLVCNFIIHSSNIEFA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2806 191 Pfam Armadillo/beta-catenin-like repeat 3 34 IPR000225 GO:0005515
Mal1g2806 191 PANTHER U BOX DOMAIN-CONTAINING 44 146 - -
Mal1g2806 191 PANTHER U BOX DOMAIN-CONTAINING 3 43 - -
Mal1g2806 191 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 44 146 - -
Mal1g2806 191 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 3 43 - -
Mal1g2806 191 SUPERFAMILY ARM repeat 3 136 IPR016024 -
Mal1g2806 191 Gene3D - 1 159 IPR011989 -
Mal1g2806 191 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 6 43 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2806 Mal-Chr1 39753029 39754643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2806 11 175 U-box Gene Family AT3G54850 45.455 6.18e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2806 - - lja:Lj5g3v1796810.1 186.808