Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2715 ATGGAGAAAGGAAGTAGGATTCATGCTACAATTAGGAGAACACTACTTTATAAGTTTCAAAGCGAAGTTACCGAAGGGAAAGTCTTTACTTTTGAAAATTTGGATGTTGCTGCCAATGGTGGCAATTATAAAACTACTAGACATCCATACAAGCTCAATTTTCAAATTGGTACTAAGCTTTTTGAACTGTCTCCTGGTGCTGTACGTGGCTCACCTTTCAAGTTTGTACCAATTCCTGAGATATGTGGTGGGACATATGACGCTGATTACTTAGTTGATGTTGTTGGTATGCTGAGTGTTGTGGGTACAGAACGTCAATATGAGAGAAATGGGAAAACAACCAAACTTAATGTTATTGCTATTGAGGCTGATGGCCATAAACTTCAGTGCACGCTATTTGGAAATTATGAAGATGACTTAAACTCTTTCTTAGTATCTGGTGATACTCATAATACTGTAGTTGTTGTGCAACTTGGGAAGACAAGTTGCACATTCAAAAGTGTGTTGACTGTACCAAGAATGCTTGGTAATGATGAGTCACCCTCATCTTTAACACTCACAAATTGCTGCTCAACAACCAATAGACCCATTGCAAGAATTTATGTTCAGCACTCCAAGGATGTTGTATTTGTTGTTCTTGGCACTATTGAGCACATTGTTAACTCAGAAAATTGGTTCTACACCGCATGTGTTTGCAACAAGTCTGTGTATCCAGATTCCAACATGTATTTTTGCGAAAAATGCAACAAACATGTTGTAAATGTCTTTCCAAGATATTCAATTAAGGCTCGTGTCATGGATGACACCGGAAGCGCCATCTTTGTTCTTTTTGATCGTGATGCAACATTGCTGATTAAAAAAACTTGTGTTGAGTTGGCTGGAGCTGGAGGTGTGCCTGCTGAAATTGATGGTTTGATTAACTCTACATATCTATTCAAGGTTGAATCCAAAGCTGTTTTTAGCCCTATATTTGAGAGGTCTTTTAGAGTGAAAAAGATTTGCAATGACACTGTCATTATCATGAGTTTTAAGGACAAGTGGGCAAAAGAGGAAGCACTGTTCCTAAAAAATGCAAATGAAATGACCTCTTTGAGTGGTTTGTGTGAAAATGGGTTAAAGGGAAAAGTTGTCTGTTCAACTGATGTTTTGAGTCAGGGTATTGAAACTCTGACTGCTACCTCATTCAAAGGAAAGGAGGTTGTGGATCAGGCCACCAAGCTTAGTGTTTCAGAGAACTTAATGCTAAAATTCTCTAATGTGGTCGACCTTGACCAACTTGAGTCTCCTTCTGCACTTCCTTCTCCATCTACAAATGTTGTTGAAAAGCCAATGGGTAAGAGGGTTTCACCTGGTGAATCAAATGTGGAAGATATTAATCAACCCATCAAATTGTTGAAGAGATGTATCAAGATAGAGAAGTTAGGTTGA 1428 0.3845 MEKGSRIHATIRRTLLYKFQSEVTEGKVFTFENLDVAANGGNYKTTRHPYKLNFQIGTKLFELSPGAVRGSPFKFVPIPEICGGTYDADYLVDVVGMLSVVGTERQYERNGKTTKLNVIAIEADGHKLQCTLFGNYEDDLNSFLVSGDTHNTVVVVQLGKTSCTFKSVLTVPRMLGNDESPSSLTLTNCCSTTNRPIARIYVQHSKDVVFVVLGTIEHIVNSENWFYTACVCNKSVYPDSNMYFCEKCNKHVVNVFPRYSIKARVMDDTGSAIFVLFDRDATLLIKKTCVELAGAGGVPAEIDGLINSTYLFKVESKAVFSPIFERSFRVKKICNDTVIIMSFKDKWAKEEALFLKNANEMTSLSGLCENGLKGKVVCSTDVLSQGIETLTATSFKGKEVVDQATKLSVSENLMLKFSNVVDLDQLESPSALPSPSTNVVEKPMGKRVSPGESNVEDINQPIKLLKRCIKIEKLG* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2715 475 PANTHER REPLICATION FACTOR A 1, RFA1 4 292 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g2715 475 CDD RPA1_DBD_C 202 317 IPR013955 -
Mal1g2715 475 Gene3D - 69 192 IPR012340 -
Mal1g2715 475 SUPERFAMILY Nucleic acid-binding proteins 2 63 IPR012340 -
Mal1g2715 475 SUPERFAMILY Nucleic acid-binding proteins 73 159 IPR012340 -
Mal1g2715 475 MobiDBLite consensus disorder prediction 429 453 - -
Mal1g2715 475 CDD RPA1_DBD_A_like 2 59 - -
Mal1g2715 475 Gene3D - 2 61 IPR012340 -
Mal1g2715 475 Gene3D - 193 335 IPR012340 -
Mal1g2715 475 SUPERFAMILY Nucleic acid-binding proteins 203 317 IPR012340 -
Mal1g2715 475 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 4 292 - -
Mal1g2715 475 Pfam Replication factor-A C terminal domain 210 292 IPR013955 -
Mal1g2715 475 Pfam Domain of unknown function DUF223 2 91 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2715 Mal-Chr1 38168985 38172773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2715 2 314 Core DNA Replication Machinery Family AT5G08020 22.039 8.59e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2715 - - mtr:MTR_4g036240 493.041