Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2689 ATGATGAATCAACTTTGTATTAGACTTTTTTTTCTCTCTATCTTATTCTTCCATCATGTGAGAGCACAAACACAAAATACAACTTCACAAGATGCTGTTTCAAATTTCCAACCAAGTCTTCTTGTTGTCATAGCAATCCTAGGTCTCATGTTTTCATTAACATTTATTCTTCTTATTTTTGCCAAAGTATGTCATCGTAGACAATTACTTCCTCTTAGTGAAGATCCAAATAATCAATTAGCAACACTCATGAGATCAAGGTCAAGATTTTCAGGAATTGACAAAACAGCAATAGAATCACTTCCTTTTTTCAAATTCTCTTCTCTTAAAGGTTCAAAACAAGGGTTGGAATGTTCAATATGTTTGTCAAAATTTGAAGACATAGAAATTCTAAGATTATTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACACTCAAGTTGTCCTATTTGTAGACACAAAGTCAACATTGAGGATCAAACAACCTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGAGATCTTTGTTGAAAGAGAAGAAGATGATCAACATGGTTCATCAAGATTTAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAAGGTGGTACTATTTTTAAGGAAGAAGAAAAAGGTACTAGTTTTAAGGAAGAAGAATTGCTTATAGAAAAAAGTGATTCTAACAATAAGGCTTATCATAAACATAATCACAAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGCAATGTTAGTTCTTCTGATCTTATGTTTTTGAATTCAGAAATGATTAATGCTACATCAAGTAACAGGTTCAACAACATGGAATCAAATATTTCATTTGAGAGCAAATTTCATGGTGAGAAAGGATCAGTGTCAGAAATCACTGGTGTTTCAAGATTTAGAGATTTTGATATGAAGAAAAAGGTGTTTGAAGATTCTTCTTCTTTGGTTGAAAATAATCTTAGAGAGGAAAGAAGGAGGAAGCTATGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAGAAGGTCTCAACCTCAAAATAAACAACAATCATTTGTAGATGTATAA 1134 0.3148 MMNQLCIRLFFLSILFFHHVRAQTQNTTSQDAVSNFQPSLLVVIAILGLMFSLTFILLIFAKVCHRRQLLPLSEDPNNQLATLMRSRSRFSGIDKTAIESLPFFKFSSLKGSKQGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVSEESNIEIFVEREEDDQHGSSRFSIGSSFRKIGKGGTIFKEEEKGTSFKEEELLIEKSDSNNKAYHKHNHKITISDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMESNISFESKFHGEKGSVSEITGVSRFRDFDMKKKVFEDSSSLVENNLREERRRKLWFPIARRTAEWFVNRERRSQPQNKQQSFVDV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2689 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Mal1g2689 377 SMART ring_2 118 159 IPR001841 -
Mal1g2689 377 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Mal1g2689 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 297 - -
Mal1g2689 377 Pfam Ring finger domain 117 160 IPR001841 -
Mal1g2689 377 SUPERFAMILY RING/U-box 97 166 - -
Mal1g2689 377 CDD RING-H2_PA-TM-RING 117 160 - -
Mal1g2689 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 297 - -
Mal1g2689 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 301 372 - -
Mal1g2689 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 301 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2689 Mal-Chr1 37742224 37743357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2689 9 374 C3H Transcription Factor Family AT4G28890 44.851 2.91e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2689 K10664 - gmx:100806950 439.884