Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2562 ATGTCTACGGTTTCTAAAGATGAAAACTTGGCACTTTCTTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGTTTAAGCCTTTCTCACCCTGCTAAATCACACCACTATCATCAGCAGCAGCATGGTTCTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCTTCTTCTTCAAAACCTTCCTCTGCTGGAACCAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGCCCCAGTCAAGTAGTTGGATGGCCTCCCCTTCGAGCATATCGAGTGAATAGCTTTAATGCCAATGCTAAATCAACTGAAGCACTCAACTCCATGGCGGATAAGAGCAAGAACAATAATACTGTGGTGCGGAAGACTGCTGACAATGGAAATGATGATAACAATGTCAATATCAAAGATAAAAGACGTGTCAGGAATTCCCCATTTGTTAAAGTAAATATGGATGGAATACCGATTGGAAGAAAGGTTGATTTGAGCGCTCATAGTTCTTATGAAACTTTGGCAGAGACATTGGAGGACATGTTTGACGAATCAACTACTGGCGTCACTTGCAAAGGATCAAATAAGGAGGATCACAACATGAGTATCAGAGGAGAAAGGCATTCAATACTGTTGGATGGATCTTCGAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGTTCTGTAAGGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAACATCAAACAGAAAAGCAAGCCTATATAG 831 0.4176 MSTVSKDENLALSSEDSSSPDESELELGLGLSLSHPAKSHHYHQQQHGSSYARIFTAKDFSSSSKPSSAGTKRPADSLDATNRPSQVVGWPPLRAYRVNSFNANAKSTEALNSMADKSKNNNTVVRKTADNGNDDNNVNIKDKRRVRNSPFVKVNMDGIPIGRKVDLSAHSSYETLAETLEDMFDESTTGVTCKGSNKEDHNMSIRGERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNIKQKSKPI* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2562 276 MobiDBLite consensus disorder prediction 1 88 - -
Mal1g2562 276 SUPERFAMILY CAD & PB1 domains 145 252 - -
Mal1g2562 276 MobiDBLite consensus disorder prediction 43 84 - -
Mal1g2562 276 ProSiteProfiles PB1 domain profile. 149 256 IPR000270 GO:0005515
Mal1g2562 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 266 - -
Mal1g2562 276 Pfam AUX/IAA family 30 263 IPR033389 -
Mal1g2562 276 Gene3D - 144 266 - -
Mal1g2562 276 MobiDBLite consensus disorder prediction 1 18 - -
Mal1g2562 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 266 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2562 Mal-Chr1 35403101 35406718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2562 144 263 B3 DNA Binding Superfamily AT1G59750 34.167 2.42e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal1g2562 AUX_IAA 8.2e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2562 K14484 - gmx:100779400 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2562 1 35403101 35406718 Mal1g2562 1 35403101 35406718 ECH