Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2555 ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCGGGCAATGACAGATCTTGAGATTCCTGAAGCAAAAGTGAAACGGGTGCTAAAGAAACTGCTAAAATTGTATGACAAAAACTGGGCACTTATCGAGGAAGATAACTATAGAGCTTTACTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGAGCCAGAACCGGAAAAGAAAAACAAGAGGGCAAATGAAGAAGAGATGGAGGCTGAAGAAGCTCTGTTAAATGCTGAACCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCCTCTTCCCCATCGAAGAAGTCTCACATAGAAAAGACCACAGCACTTGAGGGCGGCCCTTCACAGCAGCGTCGAAACAAAGCAGTGTCATCTGATGGAAATGGGAGGATTGTAGCACATCCAGGTCCCATGCGAGATGCTAGTTCTGACAGGGGAAAGCAACCTGCATCACCATATGCTTATGTATTGGCCGAACCTAAAACTGAGCCTGTTGATGAGCATGAGTCTGATTATACGCGTCCCATTGCAATAGTTCCCCCTGAACCATCAAGTTTAAGGCACTATTCAAGGAAGAATGATATTACTGGAAAGCAAGGTGGCCATGTCTCTATGACACCATCACATCACAACACAAATAAAGAAGTGGCTTCTGATGTTGTGATAGCCTCTTCAGCTAAGGGAGAAGTAAAACTTTCTCTGAGCTGCGGCTCAGCTCTTCAAGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATAATTGACCCAAATTTTTCTGTCGCAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAATGATAACTCGCAAGAAGGTTCAATGACAAAATCAAGCATTGGCGTGTCGAAGGAATCAGAGGTTAATGGCACTCCTGCCGTTGGGGGCAGTAAGGATTTGGTCACGGGTTCTCACTTATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCACGAGGCCCCATTTCGCCAGTCCATCAGAGCAGTTTGGATGATGCTGTACCGGTTTCTGAGATGGACAGGACAAATGATATTCCACTAAGTGATGTTAGAATGCAGCCACAGGATCCCATGTCTCCGAATTCACACAGTTTAGTAGTTGTTCCACATCACCAGCTTACAGCAGATGATATAAGGTCTTTTCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCTACTAATGATTTCCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCGTCTTGTTGTCAACACGTTGTGCCTGTACATATAAAACTGGGGGCGAATTTGCATATTCAGCTGAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGCATTGCTATCAGTCACAACCCTCAACAACATTGCTTTTATTGCAAAGATTGTCCACTTGAAAGGTCAAAAAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGCAATCGCGTTATCCAGCGAGGAATAACATATAACTTGCAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGATTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTATTACTATCATTTCGCCCTTTTTACTACCAGAAAAATAGCAGCACATGAAGAGCTCACTTGGGATTATGGCATTGACTTTGACGACCATGATCAACCTATTAAACTGTTCCACTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGATCCACTAGGTCTGCGTTAATTGCCGGATGA 2277 0.422 MAPRPNPKIAAALRAMTDLEIPEAKVKRVLKKLLKLYDKNWALIEEDNYRALLDAIFEEGDDFEEPEPEKKNKRANEEEMEAEEALLNAEPARPLKRLRLRGQENNSPSSASSPSKKSHIEKTTALEGGPSQQRRNKAVSSDGNGRIVAHPGPMRDASSDRGKQPASPYAYVLAEPKTEPVDEHESDYTRPIAIVPPEPSSLRHYSRKNDITGKQGGHVSMTPSHHNTNKEVASDVVIASSAKGEVKLSLSCGSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVAKMLRDICDCMLEFSTDSNDNSQEGSMTKSSIGVSKESEVNGTPAVGGSKDLVTGSHLSNGSIQVNSFSALVSPRGPISPVHQSSLDDAVPVSEMDRTNDIPLSDVRMQPQDPMSPNSHSLVVVPHHQLTADDIRSFHDVSDLTKGEENNQISWVNESTNDFPPPFNYIPQNLVFQDAYVNISLSRIGAEDSCSCIGSCVLLSTRCACTYKTGGEFAYSAEGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDADWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFTTRKIAAHEELTWDYGIDFDDHDQPIKLFHCKCGSKFCRNMKRSNRSTRSALIAG* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2555 758 MobiDBLite consensus disorder prediction 308 328 - -
Mal1g2555 758 Pfam Pre-SET motif 434 578 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g2555 758 MobiDBLite consensus disorder prediction 66 81 - -
Mal1g2555 758 Gene3D SET domain 433 744 IPR046341 -
Mal1g2555 758 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 753 - -
Mal1g2555 758 MobiDBLite consensus disorder prediction 308 340 - -
Mal1g2555 758 MobiDBLite consensus disorder prediction 59 166 - -
Mal1g2555 758 MobiDBLite consensus disorder prediction 102 140 - -
Mal1g2555 758 SMART set_7 586 725 IPR001214 GO:0005515
Mal1g2555 758 Pfam SET domain 598 719 IPR001214 GO:0005515
Mal1g2555 758 ProSiteProfiles Pre-SET domain profile. 481 583 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g2555 758 ProSiteProfiles SET domain profile. 586 719 IPR001214 GO:0005515
Mal1g2555 758 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 753 - -
Mal1g2555 758 SMART preset_2 430 570 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal1g2555 758 Coils Coil 70 90 - -
Mal1g2555 758 CDD SET_SETDB-like 454 719 - -
Mal1g2555 758 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 758 IPR025776 -
Mal1g2555 758 Gene3D - 1 62 IPR043017 -
Mal1g2555 758 Pfam Ubiquitin-binding WIYLD domain 8 61 IPR018848 GO:0018024
Mal1g2555 758 SUPERFAMILY SET domain 441 742 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2555 Mal-Chr1 35308175 35313610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2555 432 742 Su(var)3-9 homologs AT1G73100 31.307 4.26e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal1g2555 Pre-SET 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2555 - - gmx:100778335 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2555 1 35308175 35313610 Mal1g2555 1 35308175 35313610 ECH
Mal1g2555 1 35308175 35313610 Mal3g3904 3 116997752 117003984 PCT