Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2553 ATGGGTCGTAAAAAAATAGCTATTGAATTTGTTGAGAACAGGGATGCAAGGTATGTCACATTTTCTAAGAGAAAGAATGGTCTTTTTAAGAAAGCAAATGAGTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCTGCTGGTAACCCATTTGCTTTTGGCTCTCCAACTTTTCAAGCTGTGGCTGATGAGTACCTTCATGAAACACAAGCTGAATCATCGAGGCAAAATGTTGAGCCTTCAAAAAATGAAAATATCAACATGCTGAGCAAACAACTTATGGGTGTGACGAAAGAGCTGAAGAAGGTGGAGAAAAATGACAAAGGTAAAGTACCTACTGCCTATGCTGATCTTGATTTAGAGGGACTTCAAAAAGTGAAGGCTTCATTGGAAGAGCTTCGTGCTGATATTGATGCAGCATCATCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA 468 0.3868 MGRKKIAIEFVENRDARYVTFSKRKNGLFKKANELSILCNARVGIVGFTPAGNPFAFGSPTFQAVADEYLHETQAESSRQNVEPSKNENINMLSKQLMGVTKELKKVEKNDKGKVPTAYADLDLEGLQKVKASLEELRADIDAASSLLLLAKKPM* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2553 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mal1g2553 155 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 155 - -
Mal1g2553 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 Coils Coil 90 110 - -
Mal1g2553 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 PANTHER MADS BOX PROTEIN 2 155 - -
Mal1g2553 155 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Mal1g2553 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g2553 155 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2553 Mal-Chr1 35301215 35301682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2553 1 153 Type I MADS-box Gene Family AT2G34440 34.682 3.61e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g2553 SRF-TF 6.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2553 - - mtr:MTR_4g094638 192.586