Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2545 ATGAAGTTCCTACACTCAGGGGAGCAATTGGGAGGAACATATGAAACACAACCTTCATCTGAATCTCTTGTGACTAGGGACTTTTTCTCAGGAAGTGATAATTCTTTCCTACCTGGAAAACTTGATCAGAAGTTGGACACCGGCAATATAGAAGAAGCAGAATTATCTTTGCGCGAGAGTGGCGTGCTAAACTACGAGGAAGCTAGAGCATTGCTAGGAAGATACGAGTATCAAAAAGGAAATTTAGTTTCTGCTTTACACGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTTGGCTTACTGTTTGAAGCACTCTTTCTAAAAGCAAAATCGTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCGGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTTCATAAATGGAATCTTGATCCAGGGACTGTAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCTCCTAATCTGCGTTCTCAAATGGACGGCTCGTTTGTTCCGGGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCGGGTGACCTATCGAGTTTAGCCAATCATTTGGAAGAATTACTCCCTGGGACCATCCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTAATTATGGAGCAGGTAAGGACTTGGTGGCACTGGATCTTTTAAGAAAATTGTTGAGTGGTAGAGAAAGGCCGGAACACGTTCCCGGTTTGTTAATGGCTTCTAAGATTTGCTGCGAGAACCCTAGTCTTGCAGAAGAAGGGGTAAGCTTTTCTCAGAGAGCGCTTGAGAGCTTGGACGGAAGATGTAAACAATTAGAAAATGTTGCAAAATTTTATCTTGGTGTTTCATTATCAACACACTCAAAATTGGTCGTTTCTGATTTTGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCCTTGGAGACTGCTGGCAGAACGACCGGAATGAGAGACCCTTTAGTACTATACCATCTTAGTTTAGAATATGCTGAACAAAGGAAGTTGGATGAGGCACTTTATTATGCAAAGTGCGTCGTAAAACTTGAAGGTGGTTCTAACGTTAAAGGATGGTTACTGTTGGCACGGATATTATCTGCTCAAAAACAGTTTTTGGATGCTGAATCTATTATCAACGCTGCGTTGGATCAGACTGGGAAATGGGATCAGGGTGAATTGTTGCGAACGAAAGCTAAAATTCAAATTGCACAGGGACAGTTAAAGAATGCCATTGAGACATACACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAAGTTTTGGCTCGTGGAAGAAGCTATATAAGGGCAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTACTCATGTGTACATCAGTCTTTCCCAATGGCATGACGCAGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACCGTATTCTGCTTCTAGATGCCATGCACTAGGTATAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGCAATGCTTTAGACATTGATCCTGGCCATGTCCTCAGCTTAATCTCCACTGCTAAAGTTCTTAAACGTTGCAGTAATGTATCAAATCCTGCAGTCAGAAGTTTTTTGATGGATGCACTACGGCACGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGTACAATATCATCATTGGTTGAAGCTTCAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTGCTCCACTTGAACCTTTCAGATGA 2142 0.4141 MKFLHSGEQLGGTYETQPSSESLVTRDFFSGSDNSFLPGKLDQKLDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVSALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLFEALFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHKWNLDPGTVAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLSSLANHLEELLPGTIHRSERFHDLALCNYGAGKDLVALDLLRKLLSGRERPEHVPGLLMASKICCENPSLAEEGVSFSQRALESLDGRCKQLENVAKFYLGVSLSTHSKLVVSDFEKFKRQSEALQALETAGRTTGMRDPLVLYHLSLEYAEQRKLDEALYYAKCVVKLEGGSNVKGWLLLARILSAQKQFLDAESIINAALDQTGKWDQGELLRTKAKIQIAQGQLKNAIETYTQLLAVLQIQSKSFGSWKKLYKGNRDRARNLEVEIWHDLTHVYISLSQWHDAEVCLSKSKAIKPYSASRCHALGIMYEAKGLYKEALKAFRNALDIDPGHVLSLISTAKVLKRCSNVSNPAVRSFLMDALRHDRLNASAWYNLGLFHKAEGTISSLVEASECFQAAQSLEESAPLEPFR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2545 713 PANTHER PROTEIN NPGR2 1 713 - -
Mal1g2545 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Mal1g2545 713 Gene3D Tetratricopeptide repeat domain 40 564 IPR011990 GO:0005515
Mal1g2545 713 Pfam Tetratricopeptide repeat 604 634 IPR013105 -
Mal1g2545 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Mal1g2545 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Mal1g2545 713 Gene3D Tetratricopeptide repeat domain 565 709 IPR011990 GO:0005515
Mal1g2545 713 SUPERFAMILY TPR-like 418 540 IPR011990 GO:0005515
Mal1g2545 713 SUPERFAMILY TPR-like 511 685 IPR011990 GO:0005515
Mal1g2545 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2545 Mal-Chr1 35193313 35196852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2545 1 713 Calmodulin-binding Proteins AT4G28600 58.702 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2545 K21843 - gmx:100800762 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2545 1 35193313 35196852 Mal1g2545 1 35193313 35196852 ECH
Mal3g4145 3 120176927 120179833 Mal1g2545 1 35193313 35196852 PCT