Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2534 ATGGATCATGTGATTGGTGGAAAGTTTAAACTAGGAAGGAAAATTGGGAGTGGCTCTTTTGGGGAGCTCTATTTAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCGAAATTGTATATGCTTCTTCAAGGAGGAACGGGAATTCCCCACCTCAAATGGTTTGGAGTTGAGGGGGAGTACAATGTCATGGTTATCGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGAAAATTCACTTTGAAGTCAGTGTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAGTACATGCATTCAAGAGGCTTTCTTCACCGTGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGACGTAAAGCAAATCAAGTGTATGCCATTGACTTCGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAATAAAAACCTTACAGGCACGGCACGCTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGTCGAAGGGATGATCTGGAATCTCTTGGTTACGTGCTAATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGAAACAAAAAGCAAAAATATGATAAAATCAGTGAGACGAAGGTATCAACTCCGATAGAGGGGCTCTGTAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGGTCGTTGAGATTTGAGGACAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTTTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTGTATTGAAGTATCCGCAGAGTGGTGGCAGCTCTAGAGGACGGCATGGCACTGGCAAAGCAGCTATGTATGCAGCTACACCTGCACATAAAGCTATGTATGCAGCTACACCTGCACATAGAGCTATGTATGCTGCTACACCAGCACATAAAGCACAAAAGATCCCAGTTGGGAGAGAGATTCGAGAGAAATTATCTGGTGCTGTTGTTGAAGCATTCAACCATAGGAACCGCGCAAATTCTAGTCCTCATCACGCTGAATACACCAGACATAGGACTTATGACGACGATGTGCACTATGCCCAACACAATACAACTCGATATGGCAGCAGTTCAAGAAGAGCCATGGTATCAAACAAGCCAAATACTTCAGGTGATCATACTGGCAGGATGGCCACAAGTGGCGGCCGTCCATCTGGCGCACATAGAGTTCAACCTGTGTATGAGACCAAACAACCAACTTTTGCGCGCAATGGGTCTATAAGAGGCCACCGTGATGATCCTCTGAGGAGCTTTGAACTCCTCACTATCAGGAAGTAA 1410 0.4369 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTPIEGLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQSGGSSRGRHGTGKAAMYAATPAHKAMYAATPAHRAMYAATPAHKAQKIPVGREIREKLSGAVVEAFNHRNRANSSPHHAEYTRHRTYDDDVHYAQHNTTRYGSSSRRAMVSNKPNTSGDHTGRMATSGGRPSGAHRVQPVYETKQPTFARNGSIRGHRDDPLRSFELLTIRK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2534 469 PANTHER CASEIN KINASE-RELATED 1 453 - -
Mal1g2534 469 PANTHER CASEIN KINASE I-LIKE 1 453 - -
Mal1g2534 469 MobiDBLite consensus disorder prediction 368 392 - -
Mal1g2534 469 MobiDBLite consensus disorder prediction 393 420 - -
Mal1g2534 469 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Mal1g2534 469 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2534 469 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Mal1g2534 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Mal1g2534 469 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Mal1g2534 469 MobiDBLite consensus disorder prediction 363 456 - -
Mal1g2534 469 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2534 469 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2534 469 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2534 Mal-Chr1 35056029 35061863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2534 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.85e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Mal1g2534 Pkinase 8.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2534 K08960 - gmx:100789031 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2534 1 35056029 35061863 Mal1g2534 1 35056029 35061863 ECH
Mal3g3870 3 116596091 116600828 Mal1g2534 1 35056029 35061863 PCT