Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2529 ATGGAAGAAGAACAGGATCGTATTTTGCTTTCTACTTTAGGTGTTAAATCCGCCAACCCTGAAGACATCGAACGCCACATTTTCCAAAAGGCTAGGAATGATTCAGTTACTGAAGCTGAAGGGAATATTGATCAAAATGAATGTAAACGTTTACCTGAAAATGTTGATCCGTTATCTGAACTTCATCAGAAGTTGAGAGCGATAGAATTTGAAATTGGCGCGGTTTCTTCGACTATTGAAAGGCCGAGAGATGTTGATAAAAGTGAGGAATGTGGGGATGATGGTGACGAGAAGGATAATTTGGAGGAGGGGATTGGTGAGGGTGGTGGTTCGGAACTTCAGCGTGTTCTTGCTGCAGATAGGTTGAGGAGTCTCAAGAATACAAAGGCTCAATTGGAGAAAGAGCTGAAAAGTTTGTCTAAGGATGGTGATTTGAAGAACAGTGAGAGTAAAAAAGTTATATTTAGTTTAGTTAAGGAAGATAGAAGACCAAAGAAGAAGCTTATAAATGATAAGAAAGTAAGTAAAAGACCTGCAAAGCGGTTTAAGACGGTCTCGTTTGATGACGATGATGATTTTGATGCTGTTCTGGATGCTGCCTCTGCAGGATTCGTAGAAACTGAAAGGGATGAATTGGTTAGAAAAGGTATTTTTACCCCTTTTCATAAGTTGAAGGGGTTTGAGCGCCGCATTCAACAACCTGAAGCATCAACTAGTCGTAATGTAGCTGAGCAAGAAAATACCAACGATCTTGCTTATTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTGAGGCAGCAAAAGCTCGTCCAACGTCCAAGCTGCTTAAGCCTGAAGAGGTACCGAAGCTGGATGCACCTACTATTCCTTTTCGCAGGCTCAAGAAACCACTACAAATACCCAAACCTCCAGACAGTGAGGGGGATCCGAATACAGATTCAAAAAGGAAAAAGAAGCGACCTGGGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTCTGAGGACAGACAACTGGGCGATGGTGAAAATGCAAATGGTTGCTTGGACAATTCAGGTAGTGAAAGTTTAGAAGAAGTGAATGATGTTGAACTTTCTGAACATGAATCTTCGTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTACTATCATTTCTGGGTGCTTTACATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAATGGAAAAGGGAAGCTAAAAAATGGTATCCTAAATTCCATGTAGAACTTTTACACGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCTGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAAAAGTGCACCATCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTAACATTGATTGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAACGCAGAAGTTACCCTAGCTTGCAAACAGCTACAAACTGTACACCGCATAATAATGACCGGTGCACCTATTCAGAACAAACTGAGTGAACTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCGTGCTGCGGGATTTAATTATGCCTTATCTTCTCCGACGAATGAAAGCTGATGTAAATGCTCAACTTCCAAAGAAAACTGAGCACGTTCTGTTTTGCAGTCTTACACCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCACTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCATCCAGACCTACTTGAAAGGGAACAGGCCTTCAGCAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATTTACCGCAGAATGGATGGCCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCCAGTGAGATTTTTGTTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACAAATCTTACTGGGGCTGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCGACTGATATGCAGGCTAGAGAGCGTGCGTGGCGAATTGGTCAGAAACGGGATGTGACAATATATAGGTTAATCACACGAGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAAAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTTGTTTTGAATGTGGATGGAGAAACTGGGTCAACAGAAACGTCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTATTGGGACACATCAAGAAAATCAGGATAATAATGAATATAGTCAAACTGCTGAACTGGGTTCTGAAGATGATGCAGTTGGTAATGATGGCAAATCACGCAGAGGATCTTCAAGAGGAAAAGGGAAAGAGAAGGTTGACAAAAGTAATGGGGTTGATGAAGAAGTGAATATATTGAAGAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATCTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAGGAAGCTTCCAAAGTTGCACAAAGAGCTGCAGAAGCTCTACGTCAGTCAAGAATGATCCGAAGCCATGAAAGCGTCTCGGTTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGACGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAATAGCAAAGCATCTAATGAATCACCAAGCAACGGATCTAACAAATTCAATGGATGTGCTGCTGGGGCTTCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCTGGGCTTGAGCATCAGTTTGGTTTGTCGTCTAGTTCCACTAATCAGTCAAGATCTATAGATGTTAGAACTTCCAAGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGGAAAATCTGTACCTTTTTCCAACAGAAAGGTGGCAGTTGTAGTTCAGACAGCATAGTTCAGCATTTCAAGGACAGGATTCCCTCCAAAGATCTTCCCCTGTTCAAGAATATGTTAAAGGAAATAGCGACTCTGCATAAAGGGTCAAATGGTTCCCGTTGGGTTCTGAAGCCAGACTATCAAGAATAG 3660 0.4117 MEEEQDRILLSTLGVKSANPEDIERHIFQKARNDSVTEAEGNIDQNECKRLPENVDPLSELHQKLRAIEFEIGAVSSTIERPRDVDKSEECGDDGDEKDNLEEGIGEGGGSELQRVLAADRLRSLKNTKAQLEKELKSLSKDGDLKNSESKKVIFSLVKEDRRPKKKLINDKKVSKRPAKRFKTVSFDDDDDFDAVLDAASAGFVETERDELVRKGIFTPFHKLKGFERRIQQPEASTSRNVAEQENTNDLAYSSVERAARSFSEAAKARPTSKLLKPEEVPKLDAPTIPFRRLKKPLQIPKPPDSEGDPNTDSKRKKKRPGPGRKWTKRVSSEDRQLGDGENANGCLDNSGSESLEEVNDVELSEHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAESDGTDSESNSSSDNDYEKSAPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLNIDWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREQAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKQRMALMDEFNASSEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNIIGTHQENQDNNEYSQTAELGSEDDAVGNDGKSRRGSSRGKGKEKVDKSNGVDEEVNILKSLFDANGIHSAMNHDLIMDAHDEEKMRLDEEASKVAQRAAEALRQSRMIRSHESVSVPTWTGRSGAAGAPSSVRRKFGSTVKPQLLNNSKASNESPSNGSNKFNGCAAGASSGKALSSAEILSKIRGNQEKAISAGLEHQFGLSSSSTNQSRSIDVRTSKAPENSSGFQPEVMIRKICTFFQQKGGSCSSDSIVQHFKDRIPSKDLPLFKNMLKEIATLHKGSNGSRWVLKPDYQE* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2529 1219 CDD DEXHc_ERCC6 388 598 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 298 317 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 232 255 - -
Mal1g2529 1219 Gene3D - 357 648 IPR038718 -
Mal1g2529 1219 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 244 1118 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 229 360 - -
Mal1g2529 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 649 IPR027417 -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 948 972 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 344 358 - -
Mal1g2529 1219 Pfam Helicase conserved C-terminal domain 738 845 IPR001650 -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 942 972 - -
Mal1g2529 1219 Pfam SNF2-related domain 391 713 IPR000330 GO:0005524|GO:0140658
Mal1g2529 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 895 IPR001650 -
Mal1g2529 1219 SMART helicmild6 762 845 IPR001650 -
Mal1g2529 1219 CDD SF2_C_SNF 731 856 - -
Mal1g2529 1219 Coils Coil 1001 1028 - -
Mal1g2529 1219 Gene3D - 655 945 IPR027417 -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 79 112 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 477 503 - -
Mal1g2529 1219 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 400 599 IPR014001 -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 1124 1149 - -
Mal1g2529 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 907 IPR027417 -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 1037 1086 - -
Mal1g2529 1219 PANTHER SNF2/RAD54 FAMILY MEMBER 244 1118 - -
Mal1g2529 1219 SMART ultradead3 384 607 IPR014001 -
Mal1g2529 1219 Coils Coil 115 149 - -
Mal1g2529 1219 MobiDBLite consensus disorder prediction 1060 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2529 Mal-Chr1 34978177 34984357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2529 688 898 RAD5 or RAD16-like Gene Family AT5G22750 31.308 1.65e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g2529 SNF2_N 1.3e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2529 K10841 - gmx:100820025 1900.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2529 1 34978177 34984357 Mal1g2529 1 34978177 34984357 ECH