Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2523 ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCTCCTGGCTTTAGGTTTTATCCAAGTGATGAGGAGCTTGTCCTTCATTACCTTTACAAAAAGATCACAAATGAGGATGTTCTCAAAGGTACCTTGGAGGAAATTGACTTGCACACATGCGAACCTTGGCAACTTCCTGAGGTGGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTCCGTGACCGTAAATATGCAACTGGTTTTCGAACCAATCGAGCTACGACATCTGGCTATTGGAAAGCAACTGGAAAGGATCGAACGGTGTTCGATCCAATCACTCATGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTCGGTTGGAGACTCCACATATGCCACCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAAACAGAAAACAATGCCAAATTAAGTCCACAAGACATGTATGGGACAATAGCTCCATCACTAACCAACCAAACCATGCCAATTGGGTATAACCAATTTGCTTCTTACACCTCCTCAATGACAACCCATCATTGTCATATAAATGAGAACCAAAATAATTCTTTGATGAATCTCCTACAATTTTCTAATGAAACAAACACCAATTGTAGTAGTGTTACTCAAATTAGTCCCAAATGTGATAATGGTTATGGATTTTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGCCTCATCAAACTTGGAAGGAATGAGATTCGAGGTTGATAATAATAATAGCATGGTCTTGTTATAA 831 0.4055 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNAKLSPQDMYGTIAPSLTNQTMPIGYNQFASYTSSMTTHHCHINENQNNSLMNLLQFSNETNTNCSSVTQISPKCDNGYGFLWDMDLEDHHDGVASSNLEGMRFEVDNNNSMVLL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2523 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Mal1g2523 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 270 - -
Mal1g2523 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Mal1g2523 276 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Mal1g2523 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Mal1g2523 276 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2523 Mal-Chr1 34883902 34887918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2523 9 165 NAC Transcription Factor Family AT1G76420 57.500 2.57e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal1g2523 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2523 - - ccaj:109788642 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2523 1 34883902 34887918 Mal1g2523 1 34883902 34887918 ECH
Mal3g3865 3 116541586 116548181 Mal1g2523 1 34883902 34887918 PCT