Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2521 ATGCATATAGGTCAAACAGATACAGCTTCAGTAAAATGTCTGATCAACAGCATTTCTCGATTCGTTCATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAGAAGATCTGCAATAATATGGTTGCCGTGTTAAAGCGTTTGAAGCCAGTACTCGATGATGTTATGGATTACAAAATTCCTTTACCTGAAAATTTATGTAAAGTGTGTGAAGAATTGGATATACGGGTTAATGAAGCAGGAGATTTCATTGAAAAATGGGGTCCAAAGACGAGCAAGATTCACAGTGTTCTACAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCTTAGAGTCACCACCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCGATGGTCTATATAGAAAAGGCACTGACAGACCAAAGCGATGATATTGAACCTTGCAAGGAAAACCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAAAGAGACTATTGCTGTGGAAAAGGAAAGATTGAACGCTGAAGGACATAAAAGGAAAGGCGACTTGGCAGAAATCAATGAAATTGTGAATCTTGTCCGCATCATACGTGATTATGTGATGAAAACCGAGTACTTTGCTGTCAAAAGCGGTGTCTCATTCCCTCCGTACTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCGAAGACTCGTCAAAGACTTACTCATACAAATCTCACTCCTAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAACACCAATCGTTCTAGTAAATCTGAGCATAATACTGGAAATGCATTTGAAGAACACAAGGGTGATAACTCTTTCAGATCAAATGGAGAATGCAATGGATGCCAGAATGTAGAAATAGAAAAGTGGGAGCTACAATCACCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTTGTGATTGTCTACTTGCAGTTTCAAAAGATGTATCAAGGATGTCCGATAAGAATCAAAATGCGAAGGTGTCACCCGTAGATGCGGGAGGGATAGAGAATGGAAACAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTCACATTTTGTTTCAAACTTGGGATTGAATGGATTGACCACCTCGTTTCATGTCAACAAATTGATTGAAGATCTCCAAAACGAATCAATAGAAGTGAAAACTACTGCTGCAGAAGAACTGAGGCTACTTACAAAGCATAACACAGAAAACCGTATCATTGTAGGGCAGTGTGGTGCTGTCACGCCTTTACTTTCGCTGCTATATTCAGACGGGAAAGTAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAAGCCTTGATTATGGAAGCGGGAGCTATAGAACCCCTTATCCATGTTTTAAAGACAGGAAATGACAGTGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAGTAAAGCAAAAATCGGCCGTTCCGGTGCAATTAAAGCTTTGGTGGAACTTCTTGCCTCAGGAACACTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATATAACCTCTCAATATTTCACGAGAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTGAGTTAACGGATCCTGCCAATGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCGACGATTGCGGAGGGAAGGTTAGAAATTGCAAGAGAAGGTGGTATCCCTTCATTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTTACAATTATGCCTTCATAGTTCCAGATTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAACGGGAAGGAGCTACCACAAAGGGAAAATCATGA 2178 0.4022 MHIGQTDTASVKCLINSISRFVHLVSCQTVKPMPFQKICNNMVAVLKRLKPVLDDVMDYKIPLPENLCKVCEELDIRVNEAGDFIEKWGPKTSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLESPPSASVLANLQHYIQELQCLKKETAMVYIEKALTDQSDDIEPCKENLKEIIELLKLTSTQELLKETIAVEKERLNAEGHKRKGDLAEINEIVNLVRIIRDYVMKTEYFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLTPNYTVKAMIATWCEENNTNRSSKSEHNTGNAFEEHKGDNSFRSNGECNGCQNVEIEKWELQSPYIHSRSESFSSSISSCDCLLAVSKDVSRMSDKNQNAKVSPVDAGGIENGNNNNSNTTNSHSRVDSHFVSNLGLNGLTTSFHVNKLIEDLQNESIEVKTTAAEELRLLTKHNTENRIIVGQCGAVTPLLSLLYSDGKVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDSAKENSAAALFSLSVMENSKAKIGRSGAIKALVELLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVELTDPANGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATTKGKS* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2521 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 603 644 IPR000225 GO:0005515
Mal1g2521 725 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 400 720 - -
Mal1g2521 725 SUPERFAMILY ARM repeat 439 712 IPR016024 -
Mal1g2521 725 SMART arm_5 592 631 IPR000225 GO:0005515
Mal1g2521 725 SMART arm_5 469 509 IPR000225 GO:0005515
Mal1g2521 725 SMART arm_5 510 550 IPR000225 GO:0005515
Mal1g2521 725 SMART arm_5 632 672 IPR000225 GO:0005515
Mal1g2521 725 SMART arm_5 551 591 IPR000225 GO:0005515
Mal1g2521 725 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Mal1g2521 725 MobiDBLite consensus disorder prediction 389 420 - -
Mal1g2521 725 SUPERFAMILY RING/U-box 239 313 - -
Mal1g2521 725 Gene3D - 514 722 IPR011989 -
Mal1g2521 725 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Mal1g2521 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 562 604 IPR000225 GO:0005515
Mal1g2521 725 MobiDBLite consensus disorder prediction 701 725 - -
Mal1g2521 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 325 IPR013083 -
Mal1g2521 725 PANTHER U BOX DOMAIN-CONTAINING 400 720 - -
Mal1g2521 725 PANTHER U BOX DOMAIN-CONTAINING 11 332 - -
Mal1g2521 725 MobiDBLite consensus disorder prediction 403 420 - -
Mal1g2521 725 Pfam Armadillo/beta-catenin-like repeat 510 549 IPR000225 GO:0005515
Mal1g2521 725 Pfam Armadillo/beta-catenin-like repeat 469 508 IPR000225 GO:0005515
Mal1g2521 725 Pfam Armadillo/beta-catenin-like repeat 556 590 IPR000225 GO:0005515
Mal1g2521 725 MobiDBLite consensus disorder prediction 313 332 - -
Mal1g2521 725 Pfam U-box domain 242 312 IPR003613 GO:0004842|GO:0016567
Mal1g2521 725 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 332 - -
Mal1g2521 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 480 522 IPR000225 GO:0005515
Mal1g2521 725 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Mal1g2521 725 Gene3D - 434 513 IPR011989 -
Mal1g2521 725 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2521 Mal-Chr1 34810764 34815226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2521 7 725 U-box Gene Family AT3G54790 53.125 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2521 - - mtr:MTR_1g069845 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2521 1 34810764 34815226 Mal1g2521 1 34810764 34815226 ECH