Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2511 ATGCCGTCGCTACTCTCTCCGGGCAAAATCCAACGCCTCGAACTCTCAAACTTCAAATCCTACAAAGGCTTCCAACAAATCGGCCCCTTCTACGACTTCACCGCCATCATCGGCCCTAACGGCGCCGGTAAATCCAACCTCATGGATGCAATTAGCTTCGTCCTCGGTGTTCGCACCAACCAACTCCGTGGTGCGCAATTGAAAGATCTCATCTACGCTTTCGATGATCGAGAGAAGGAACAGAGAGGAAGAAAAGCGTTTGTTCGATTGGTTTATCAGCTTGCGAATGAATCCGAAATCAAATTCACTAGAACTATTACTTCCGCTGGTGCTAGTGAGTATCGGATTGATGATAGTGTTGTTAATTGGGATGCTTACAATGCGAAACTCAAGTCGTTAGGGATTCTTGTTAAAGCTCGCAATTTCTTGGTTTTTCAGGGTGATGTGGAATCGATTGCGTCGAAGAATCCAAAGGAGCTGACTGGACTTATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGATTATGAGCAGTTTGAAGAAGAGAAAGCTTCTGCTGAGGAGAAATCGGCGCTTGTTTATCAGAAGAAGAAGACGATGATTATGGAGAGGAAGCAGAAGAAAGAACAAAAGGAAGAGGCAGAGAAACATCTCAGGCTGCAAGATCAATTGAAATCTATGAAGAAGGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATGTTGTTAAAACAACCGAGGAACTCGAAGCCGATAAAAGAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTTTGAACATGAAGCCAGCAAAAAGAAAAAAGAGCAAGCCAAATATCTGAAAGAAGTTATGCTACGTGAGAAGAAAATAACCGAGAAAGGCAACAGACTTGACAAGACTCAACCTGAGCTACTTAAGTTAAAGGAGGAAATGTCTCGTATTAGTACAAAAATTAAAAAAGGGAAGAAGGAGCTTGGCAAAAAAAAGGAAGAGCAAAGGAGGCACGTGGATGATATAGCAGAGCTACAGACTGAAATTCGAGATCTTAGTCTGAAAATGGCAGACCTAAAGGAAAAGGGTCAAAATGTTGGCGATCAGATTAAGTTAGATGGCAATGACTTGGAAGAATATTTTAGAATAAAAGAGGAAGCTGGGATGAAAACCGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAACATGCTGATAGTGAAGCTCAAAATAATTTGGAAGAAAATCTTCAACAATTAAAAAACCGGGAGGCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATTCTTGATAGTTCTGCAAAGAATAGGGATGTTGTTGAAAACTTGAATAGAGAACTGCGTGAGATGAAAGAAAAGCATAACGAGTCCAAGAGAAAATATGATAACTTGAAGATAAAAATTGGCGAATTAGAAAATAATCTACGTGAATTGAAGGCTGATAGATATGAAACCGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCAACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACCAATCTTTGTAGTCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAAACATTTATTCCTCTACAATCTATTCGCGTGAAGCAAATAATGGAAAGATTACGCTCATTAGGGGGTACGGCAAAACTGGTTTTCGATTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTCGGGAATACTCTTGTTTGTGAAGACCTCGAGGAGGCCAAAATTTTAAGCTGGAGCGGGGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTTTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAACTTGAAGCAATTGTCAAGAAGAAAGAGGAGTTTGAATTGCAGTTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAACAGAAGGGAAAAAAAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGAAAAGCATTGAAGACAAACTTTCAACTTTTAGTCGCGAAAAGGGGACCATCAGAGAAGGAATCAAACGTATTAGTCCTGAACTGAACAAGTTAAGAGATGCTGTTGCAAAGAGGGATAAAGAATTACGTACTCTTGAGAAGAGGATAAATGAAATCACTGACCGGATATACAAAGACTTCAGCAAGTCAGTTGGGGTTGCAAACATTCGTGAGTACGAAGAAAATCGACTCAAGGATGCTCAAAATGCAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCGAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGCTCACGAATTCAAGAATTGGAATCTTCTGTAAGTGCTTTAGAGAATGATTTAAAACGGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCAGAGAAAGCTACTGAAGAGATCAATCAGTTAAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAGGAATGGAAGAAGAAGGCTTCGGCAGCCACAACAAACTTATCCAAACTTAATCGTCTGATAAACTCAAAGGAGGCACAGATTGAGCAGTTGATAGGGCACAAGCAGGAAATATCAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAGTCATATCAGATCCTATGGATACTGATACCTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTCAGTAGGACCCTAAAAGATAGGAGACAATCTGACCGGGAAAAAATAGAGGTAGAATTTAAGCAAAAAATGGATGCATTGATATCAGAGATCGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGTTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGAAGGAAAAAGCAGATAGATTTAATGCAGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAATCATATAGCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCACTGGGTGGAACAGCATACCTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGTTTCCGCGACATGGAACAACTATCTGGTGGTGAAAAAACTGTTGCTGCGCTTGCGTTGCTGTTCTCCATCCATAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGACGCGGCATTGGACAACTTGAATGTCGCAAAGGTTGCTGGCTTCATTCGTTCAAAATCTTGTGGAGGAGCGAGGGTTACTCAGGATGCTGATGGTGGAACTGGTTTTCAGAGTATTGTAATATCATTGAAAGACAGCTTCTATGACAAAGCCGAATCGTTAGTTGGGGTTGTCAGGGACTCTGATAAAGGTTGTTCGGGTACTCTCACAATGGATCTGACTAAATACCGGGAGTTCTAA 3651 0.4084 MPSLLSPGKIQRLELSNFKSYKGFQQIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTNQLRGAQLKDLIYAFDDREKEQRGRKAFVRLVYQLANESEIKFTRTITSAGASEYRIDDSVVNWDAYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKASAEEKSALVYQKKKTMIMERKQKKEQKEEAEKHLRLQDQLKSMKKEHFLWQLFNIENDVVKTTEELEADKRSREGVIEELENFEHEASKKKKEQAKYLKEVMLREKKITEKGNRLDKTQPELLKLKEEMSRISTKIKKGKKELGKKKEEQRRHVDDIAELQTEIRDLSLKMADLKEKGQNVGDQIKLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQNNLEENLQQLKNREAELDSQEKQMRERLEKILDSSAKNRDVVENLNRELREMKEKHNESKRKYDNLKIKIGELENNLRELKADRYETERDAKLSQAVATLKRLFQGVHGRMTNLCSPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKLEAIVKKKEEFELQLEELGSIRDMHLKESETEGKKSGLEKKIQYAEIEKKSIEDKLSTFSREKGTIREGIKRISPELNKLRDAVAKRDKELRTLEKRINEITDRIYKDFSKSVGVANIREYEENRLKDAQNAAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSVSALENDLKRVQNKEAEAKLAAEKATEEINQLKDEAKEWKSKSEDCEKEIQEWKKKASAATTNLSKLNRLINSKEAQIEQLIGHKQEISEKCELEQISLPVISDPMDTDTSTPGPVFDFDKLSRTLKDRRQSDREKIEVEFKQKMDALISEIERTAPNLKALDQYEVLLEKERAVTEEFEAVRKEEKEKADRFNAVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCGGARVTQDADGGTGFQSIVISLKDSFYDKAESLVGVVRDSDKGCSGTLTMDLTKYREF* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2511 1216 Gene3D - 496 577 - -
Mal1g2511 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mal1g2511 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 274 IPR027417 -
Mal1g2511 1216 Coils Coil 307 327 - -
Mal1g2511 1216 Coils Coil 447 502 - -
Mal1g2511 1216 Gene3D - 578 659 - -
Mal1g2511 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g2511 1216 Coils Coil 342 362 - -
Mal1g2511 1216 Coils Coil 405 442 - -
Mal1g2511 1216 Coils Coil 708 728 - -
Mal1g2511 1216 Coils Coil 828 932 - -
Mal1g2511 1216 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g2511 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1158 IPR027417 -
Mal1g2511 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Mal1g2511 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1215 - -
Mal1g2511 1216 Coils Coil 170 231 - -
Mal1g2511 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1215 - -
Mal1g2511 1216 Coils Coil 750 777 - -
Mal1g2511 1216 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Mal1g2511 1216 SUPERFAMILY Smc hinge domain 481 680 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal1g2511 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Mal1g2511 1216 Coils Coil 251 285 - -
Mal1g2511 1216 Gene3D - 8 232 IPR027417 -
Mal1g2511 1216 Gene3D - 904 1215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2511 Mal-Chr1 34669721 34683498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2511 6 92 Structural Maintenance of Chromosomes family AT5G07660 35.106 1.33e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2511 K06636 - gmx:100791953 1903.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2511 1 34669721 34683498 Mal1g2511 1 34669721 34683498 ECH