Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2493 ATGCCTCATAGGATGAGTGATCCCTCTTTGTTCCACAACCAAGATATGGAAATGCTGCAAGGCCCTTCAGAAATTTCCTTTGAATCATTTGGTATTAATCATGATTTTCTTTCCTTTGATATGGTTGATTTCTCATCGAGTTCGCAGACACCAATTACCGAAATAGAGCCAAAACAATTGAGGTTGAAGTCATCATCTGAAGCAAAAGAAGTGTTGCAGAATAATACTAATAAGATGAATCAAAAGCCATCTTATATAGGTGTGAGAAAAAGACCTTGGGGAAAATATGCAGCTGAGATTAGAGACACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCATATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTATTCTCAATTTTTCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGTTCTTCACCTGCACTTGCACTCAAGGAGAAGCACTATGAACAAAGAAAGATGTTATCAAAAGGTGTAAAGAATAATAAATCAAGGAAGCAAGATCAATCAGAGGGATCATCAAATGTGTTGGTATTAGAGGATTTAGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGATGATAATCAAAGTACAAGCAGCAACAGCTACTTCTAA 690 0.3652 MPHRMSDPSLFHNQDMEMLQGPSEISFESFGINHDFLSFDMVDFSSSSQTPITEIEPKQLRLKSSSEAKEVLQNNTNKMNQKPSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAILNFSVQRVKESLQEIQYDCRKGSSPALALKEKHYEQRKMLSKGVKNNKSRKQDQSEGSSNVLVLEDLGVEYLEQLLTISDDNQSTSSNSYF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2493 229 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 35 216 - -
Mal1g2493 229 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 PANTHER DNA-BINDING DOMAIN 35 216 IPR044808 GO:0003700|GO:0009873
Mal1g2493 229 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Mal1g2493 229 Pfam AP2 domain 83 134 IPR001471 GO:0003700|GO:0006355
Mal1g2493 229 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2493 Mal-Chr1 34466591 34467280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2493 84 220 AP2-EREBP Transcription Factor Family AT3G23240 60.284 1.70e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g2493 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2493 K14516 - gmx:100527364 228.409