Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2490 ATGCATATGATGAGTACCTCTTTCTTCCATAACCCAGATTTAGAAATGTTGCAACAAGATCCTACTAATATTCTATTTGAATCAATTCATCATGACCCTATTCATGATTATCTTTCCTTTAACATGGTTGACCAACAAAGACCAAACAGAAACAAACCAAATCAATTAATGAATAATTCTGAAACTAAAGAAAGATCATACATAGGTGTGAGGAAAAGACCTTGGGGAAAATATGCAGCAGAGATTAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTTAATGAGAGGTAATAATGCTGTCCTCAATTTTTCAGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGTTCTTCACCTGCACTTGCACTCAAGGAGAAGCACTATAACCAAAGAAAATTAATGTCATCATCAAAAGGTAAAGGGAAATCACAAGAATCAGCAGAGGTATCATCAAGTGTGTTGGTGTTAGAGGATTTAGGAGTTGAATATCTTGAGCAACTTCTAACAATATCTGACAATCAAAAGAAGAAAAAAAAATTATGTGGTTCGACGCTTCTTGCATACATCCACGGAAATGCCTCAACGATTATATTCACTCTCTCAAATAAGATTATAACTATAGTAACTCAACCTGAATTTGTATCACTCTACAAATTCAAGCACTCTCACTCAAGACTCATTAATTACAAGAAACTCTCTCACACTCGCACAAGTGATCTTGCACACACTTGCTCTCTTCTCTTGCTATGTGGATTGAAATGA 840 0.356 MHMMSTSFFHNPDLEMLQQDPTNILFESIHHDPIHDYLSFNMVDQQRPNRNKPNQLMNNSETKERSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFLMRGNNAVLNFSVQRVKESLQEIQYDCRKGSSPALALKEKHYNQRKLMSSSKGKGKSQESAEVSSSVLVLEDLGVEYLEQLLTISDNQKKKKKLCGSTLLAYIHGNASTIIFTLSNKIITIVTQPEFVSLYKFKHSHSRLINYKKLSHTRTSDLAHTCSLLLLCGLK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2490 279 PANTHER DNA-BINDING DOMAIN 25 197 IPR044808 GO:0003700|GO:0009873
Mal1g2490 279 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Mal1g2490 279 CDD AP2 67 123 IPR001471 GO:0003700|GO:0006355
Mal1g2490 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 25 197 - -
Mal1g2490 279 MobiDBLite consensus disorder prediction 45 64 - -
Mal1g2490 279 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Mal1g2490 279 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Mal1g2490 279 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Mal1g2490 279 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Mal1g2490 279 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Mal1g2490 279 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2490 Mal-Chr1 34386413 34387902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2490 59 199 AP2-EREBP Transcription Factor Family AT3G23240 58.451 1.55e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal1g2490 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2490 K14516 - gmx:100812017 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2490 1 34386413 34387902 Mal1g2490 1 34386413 34387902 ECH
Mal1g2490 1 34386413 34387902 Mal3g3837 3 116202298 116203014 PCT