Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2479 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATACCAAGCTCTACCACCTATCATAACTCAGAATAATACATTTCATCCTCACCCTCCACAACCTGTTTCAGACTATACTTTTCCAATATTTGCCATTGTTGTTCTCAGCATCATGGCTACCATTTTGTTGCTCCTCAGCTACTTCACTTTTTTAACCAAATGCTGCTCAAATTGGAACCAAGTTAACCCAACGAGATGGATTTCGGTCCTTCGAGTTCGACAGAATGAGGAAGATCACTTCATAGCATTGTCTCCTACATTGTGGAACCGAGGACTAGATGAATCAGTCATCAGAGAAATCCCATCTTTTCAGTTTATAAAAGGAGAATGCGAGGATCAAAGTGTATATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGATGTGATAAAAATTCTTCCAAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGCCCTCTTTGTAGATCAAGCATTTCAGGAAATACAACAAACACTCCATTTGACATTATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTACTCTCTAACTTAGGTAGTGATGAAGATTTCGTGGTCATTGAATTAGGTGGAGGAGAAAATGAGGTTGAGCAAGAAAGAAATGAGTCAAGGGGAAGCATAGAACATAGTAGAAATTATCCCTCTACAAGGAAAATGAAACCAAAGAAGTGTCATCATGTTTCCATCATGGGAGATGAGTGCATTGATATCATCAGAAAGAAAGATGACACATTTTCGATTCAGCCGATTCGAAGATCTTTCTCGATGGATTCTGCAAATGATAGACAAGTTTTCATGGATGTTCAAACGATTATACAACGAAATGAGGCTAGTGCAAGTGAGGAATGTAATAGCAGAAGTAAAAGAGCATTCTTTCCATTTTGTTATTATGGAAAGGGATCCAAAAATGCAATCCTTCCATTTGAAGAATGA 1008 0.38 MAMNKNQFYKLGYQALPPIITQNNTFHPHPPQPVSDYTFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPTRWISVLRVRQNEEDHFIALSPTLWNRGLDESVIREIPSFQFIKGECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTNTPFDIIIAPSSSPQDSQLLSNLGSDEDFVVIELGGGENEVEQERNESRGSIEHSRNYPSTRKMKPKKCHHVSIMGDECIDIIRKKDDTFSIQPIRRSFSMDSANDRQVFMDVQTIIQRNEASASEECNSRSKRAFFPFCYYGKGSKNAILPFEE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2479 335 SMART ring_2 130 171 IPR001841 -
Mal1g2479 335 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 334 - -
Mal1g2479 335 Pfam Ring finger domain 130 172 IPR001841 -
Mal1g2479 335 MobiDBLite consensus disorder prediction 217 244 - -
Mal1g2479 335 CDD RING-H2_PA-TM-RING 130 172 - -
Mal1g2479 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Mal1g2479 335 MobiDBLite consensus disorder prediction 218 240 - -
Mal1g2479 335 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Mal1g2479 335 PANTHER RING-H2 FINGER PROTEIN ATL16 1 334 IPR044600 GO:0016567|GO:0016740
Mal1g2479 335 SUPERFAMILY RING/U-box 124 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2479 Mal-Chr1 34203354 34204361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2479 30 299 C3H Transcription Factor Family AT1G04360 45.779 1.08e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2479 K19041 - gmx:100809883 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2479 1 34203354 34204361 Mal1g2479 1 34203354 34204361 ECH
Mal1g2479 1 34203354 34204361 Mal3g3827 3 116099438 116100385 PCT