Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2460 ATGGAATTCAGCTACCTTCAAGAAGATTCAAAGAGCTCAAGCGACGAAAACATCGATCGATCATCCGACCAAAACAACGATGATGATCATGATCATCACATGGGAATTGGTAGATCTTATGAGTGTGTGTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAATAACAAAAGTGCCACCAAAACCAATTTTGCTCCTACTAGTTCAAGCAAATTAGTAGTTGATCATGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTGCAAGAGGGGGTTATTATTCTTCAATTTCATCCACAACAACTACTCCTGAGGTAGATTCTCTTAATTATCATCAAATATATTTTCCTTCACATCATGTGCAATATAGTGAGATGTTGTGTGTTGAAAATCAAAGGATGTTTGGACAAGATTGGAGGGGTTTGAGCTTGTATACAAATCCATTAAATAAAGACAAGATAGAAAACAACAATGAAGTGGGTGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 576 0.3594 MEFSYLQEDSKSSSDENIDRSSDQNNDDDHDHHMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKSATKTNFAPTSSSKLVVDHDNYGDLGFYSTINPSHLARGGYYSSISSTTTTPEVDSLNYHQIYFPSHHVQYSEMLCVENQRMFGQDWRGLSLYTNPLNKDKIENNNEVGELDLELRLGHYP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2460 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Mal1g2460 191 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 191 - -
Mal1g2460 191 PANTHER OS07G0101800 PROTEIN 7 191 - -
Mal1g2460 191 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Mal1g2460 191 MobiDBLite consensus disorder prediction 1 32 - -
Mal1g2460 191 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Mal1g2460 191 Pfam C2H2-type zinc finger 40 64 - -
Mal1g2460 191 MobiDBLite consensus disorder prediction 12 32 - -
Mal1g2460 191 Gene3D Classic Zinc Finger 21 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2460 Mal-Chr1 33707821 33708396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2460 38 191 C2H2 Transcription Factor Family AT4G17810 31.210 1.60e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g2460 zf-C2H2_6 1.7e-05 CL0361