Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2441 ATGGCCACAGAAGAACCAATTGTTGCAGTGGAAACTGTTCCCGAACCAACCATCGCTGCCGAACCTCCAGCTTCGGAGAAAGATCACTCCGAACCAAAGGCTGCTGAAACAGAGAAGAATACGAAGGAATCAAAACCTAAGAAAGTTTCCAAACCACGAAACCCTTCTTCTCATCCTACTTATGAAGAGATGATTAAGGATGCAATTGCGACGCTGAAGGAGAGGACCGGTTCAAGCCAATTCGCAATTGCGAAATTCATCGAAGAGAAACACAAACAGCTTCCTTCAAATTTCAAGAAGTTATTGCTTCAAAATTTGAAGAAGAATGTTGCTAATGGAAAACTCGTTAAGGTGAAAGGCTCATTCAAGCTTTCTGCGGCTGCGCCCAAACCCAAGGCAAAGCCAGCTGCTAAGGTGAAAGCTGTTAAGGCCAAGCCAGCCGCGAAGCCGAAGACTAAAGCTGTTGTCAAGCCAAAGGCTGCTTCAAAGCCCAAATCTGTTACCGCCAAGCCCAAAGCTGCTGCTGTAAAGCCCAAGCCCAAGGCTGCTGCTGTCAAGCCCAAAGCTGTTGCGAAGCCCAAAACTGCTGCAACCAAGACCAAAGCTGCAGTGAAAGCAAAGCTTAATGCAAAGGTTGCAAGGACATCAACGAGGATTACACCAGGGAAGAAAATTGCTGCTGCAAAACCAGCACCGAAGAAAGTGGCGGCTGCAAAGAAAAAAGCTCCGGTGAAGAGCGTTAAGTCTCCAGCTAAGAAGGTTTCGGTGAAGAGAGGGGGAAGGAAATGA 789 0.474 MATEEPIVAVETVPEPTIAAEPPASEKDHSEPKAAETEKNTKESKPKKVSKPRNPSSHPTYEEMIKDAIATLKERTGSSQFAIAKFIEEKHKQLPSNFKKLLLQNLKKNVANGKLVKVKGSFKLSAAAPKPKAKPAAKVKAVKAKPAAKPKTKAVVKPKAASKPKSVTAKPKAAAVKPKPKAAAVKPKAVAKPKTAATKTKAAVKAKLNAKVARTSTRITPGKKIAAAKPAPKKVAAAKKKAPVKSVKSPAKKVSVKRGGRK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2441 262 PRINTS Histone H5 signature 188 205 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2441 262 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2441 262 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2441 262 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2441 262 SUPERFAMILY "Winged helix" DNA-binding domain 54 137 IPR036390 -
Mal1g2441 262 MobiDBLite consensus disorder prediction 214 262 - -
Mal1g2441 262 MobiDBLite consensus disorder prediction 234 262 - -
Mal1g2441 262 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2441 262 CDD H15 55 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2441 262 Gene3D - 53 132 IPR036388 -
Mal1g2441 262 PANTHER HISTONE H1.1 2 262 - -
Mal1g2441 262 MobiDBLite consensus disorder prediction 136 158 - -
Mal1g2441 262 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2441 262 Pfam linker histone H1 and H5 family 58 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2441 262 MobiDBLite consensus disorder prediction 1 63 - -
Mal1g2441 262 MobiDBLite consensus disorder prediction 22 50 - -
Mal1g2441 262 MobiDBLite consensus disorder prediction 126 199 - -
Mal1g2441 262 PANTHER HISTONE H1 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2441 Mal-Chr1 33204338 33205225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2441 38 129 Single Myb Histone (SMH) Gene Family AT1G49950 35.789 2.46e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2441 K11275 - gmx:100795994 170.629