Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2440 ATGGCCACAGAAGAACCAATTGTTGCAGTGGAACCTGTTCCTGAACCAACCATCGCTGCCGAACCTCCAGCTTCGGAGAAAGATCACTCCGAACCAAAGGCTGCTGAAACAGAGAAGAAGACGAAGGAATCTAAACCTAAGAAAGTTTCCAAACCACGAAACCCTTCTTCTCATCCTACTTATGAAGAGATGATTAAGGATGCAATTGCGACTCTGAAGGAGAGGACAGGTTCAAGCCAATTTGCAATTGCGAAATTCATCGAAGAGAAACACAAACAGCTTCCTTCAAATTTCAAGAAGTTATTGCTTCAAAATTTGAAGAAGAATGTTGCTAATGGAAAACTCGTTAAGGTGAAAGGCTCATTCAAGCTTTCTGCGGCTGCGCCCAAACCCAAGGCAAAGCCAGCTGCTAAGGTGAAAGCTGTTAAGGCCAAGCCAGCCGCGAAGCCGAAGACTAAAGCTGTTGTCAAGCCAAAGGCTGCTTCAAAGCCCAAATCTGTTACCGCCAAGCCCAAAGCTGCTGCTGTCAAGCCCAAGCCCAAGGCTGCTGCTGTCAAGCCCAAAGCTGTTGCAAAGCCCAAAACTGCTGCAACCAAGACCAAAGCTGCAGTGAAAGCAAAGCCCAATGCAAAGGTTGCAAGGACATCAACGAGGACTACACCAGGGAAGAAAATTGCTGCTGCAAAGCCAGCACCGAAGAAAGTTGCGGCTGCAAAGAAGAAAGCTCCGGTGAAAAGTGTGAAGCCTAAGACTAAGAGCGTTAAGTCACCGGCGAAGAAAGTTTCGGTGAAGAGAGGAGGAAGGAAATGA 810 0.4741 MATEEPIVAVEPVPEPTIAAEPPASEKDHSEPKAAETEKKTKESKPKKVSKPRNPSSHPTYEEMIKDAIATLKERTGSSQFAIAKFIEEKHKQLPSNFKKLLLQNLKKNVANGKLVKVKGSFKLSAAAPKPKAKPAAKVKAVKAKPAAKPKTKAVVKPKAASKPKSVTAKPKAAAVKPKPKAAAVKPKAVAKPKTAATKTKAAVKAKPNAKVARTSTRTTPGKKIAAAKPAPKKVAAAKKKAPVKSVKPKTKSVKSPAKKVSVKRGGRK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2440 269 Pfam linker histone H1 and H5 family 58 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2440 269 Gene3D - 52 138 IPR036388 -
Mal1g2440 269 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2440 269 PRINTS Histone H5 signature 188 205 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2440 269 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2440 269 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g2440 269 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2440 269 PANTHER HISTONE H1.1 2 269 - -
Mal1g2440 269 CDD H15 55 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2440 269 PANTHER HISTONE H1 2 269 - -
Mal1g2440 269 MobiDBLite consensus disorder prediction 136 158 - -
Mal1g2440 269 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g2440 269 SUPERFAMILY "Winged helix" DNA-binding domain 54 137 IPR036390 -
Mal1g2440 269 MobiDBLite consensus disorder prediction 22 50 - -
Mal1g2440 269 MobiDBLite consensus disorder prediction 234 269 - -
Mal1g2440 269 MobiDBLite consensus disorder prediction 1 64 - -
Mal1g2440 269 MobiDBLite consensus disorder prediction 128 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2440 Mal-Chr1 33199341 33200248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2440 52 129 Single Myb Histone (SMH) Gene Family AT1G49950 38.462 5.92e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2440 K11275 - gmx:100795994 141.354