Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2438 ATGGAAGTCGAAGTTGTAGGCCTTCTTGAATTGATCAAAGTGGCGATCGATAGTGATATGCAAGATGATGTGGTCAAATTGAATGATAAACTTGCATTAGAAGTCGTTTCACTACCTAATATTCCTTATAATGAATTTGGGGATATCATCTCTCAATCCGCGAAGGAGGAGAAACCGAGTGTTGTTGTTGTTGTTGTTGCAATCATGGCGGATGTTGAACCAGAGGTAGCAGCAGCAGGAGTGCCAAAGAAGAGAACATTCAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTTTTGGATATGTCCACTGATGAACTTGTCAAGCTTTTCTCTGCTCGTGCTCGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAAAGGGAGGCACCACCTGGTGAGAAGCCTGAACCAGTGAGGACTCACCTCCGTAACATGATCATTGTGCCTGAGATGATCGGTAGCATCATTGGTGTTTACAATGGAAAGACCTTCAATCAAGTTGAAATTAAGCCTGAAATGATTGGCCACTATCTGGCTGAGTTTTCAATCTCATACAAACCTGTTAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCCTCTAGGTTTATTCCTCTCAAGTGA 663 0.4449 MEVEVVGLLELIKVAIDSDMQDDVVKLNDKLALEVVSLPNIPYNEFGDIISQSAKEEKPSVVVVVVAIMADVEPEVAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2438 220 Pfam Ribosomal protein S19 118 203 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 PRINTS Ribosomal protein S19 family signature 153 172 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 PRINTS Ribosomal protein S19 family signature 185 200 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 PRINTS Ribosomal protein S19 family signature 173 185 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 70 220 - -
Mal1g2438 220 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 70 220 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 ProSitePatterns Ribosomal protein S19 signature. 173 197 IPR020934 GO:0003723
Mal1g2438 220 SUPERFAMILY Ribosomal protein S19 123 204 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 TIGRFAM uS19_arch: ribosomal protein uS19 87 220 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mal1g2438 220 Gene3D 30s Ribosomal Protein S19; Chain A 77 220 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mal1g2438 220 Hamap 30S ribosomal protein S19 [rpsS]. 116 209 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2438 Mal-Chr1 33149890 33152642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2438 69 220 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.474 9.43e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2438 K02958 - qsu:112027473 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2438 1 33149890 33152642 Mal1g2438 1 33149890 33152642 ECH