Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2422 ATGATGGTGTTTGAGGAAACTGAACTGAGGCTAGGACTGGGATTGCCTGGAGGGAAAGCAACAGAAGTAGTAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTTGATTTGAAGCTTAATCTCTCTGCTAAGGAAGGTGCAGCAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGCCAAGCCTCCAGCTAAGGCACAAGTTGTAGGGTGGCCACCAGTGCGGTCATTCCGGAAGAACATGTTTGCAGCCCAGAAGAGCAATGGAGAATCGGAGGAAAGTGAGAAGAAAAGCTCTGCTGCCCCAATAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTTCGCAAAGTAGACCTCAAAATGTACAAGAGTTACCCAGAACTCTCTGATGCTTTAGCCAAAATGTTTAACTGCTTTACCACAGGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGCACCAAGAGCCATGGAAAAGTGCAAGAACAGGAGCTAG 705 0.4468 MMVFEETELRLGLGLPGGKATEVVRKRGFSETESESETNTVDLKLNLSAKEGAADPQFKPKEKALLLSDSGAKPPAKAQVVGWPPVRSFRKNMFAAQKSNGESEESEKKSSAAPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNCFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2422 234 Gene3D - 109 228 - -
Mal1g2422 234 ProSiteProfiles PB1 domain profile. 115 216 IPR000270 GO:0005515
Mal1g2422 234 Pfam AUX/IAA family 7 225 IPR033389 -
Mal1g2422 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 227 IPR003311 GO:0005634|GO:0006355
Mal1g2422 234 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 227 - -
Mal1g2422 234 SUPERFAMILY CAD & PB1 domains 108 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2422 Mal-Chr1 32691277 32693889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2422 101 224 B3 DNA Binding Superfamily AT4G23980 32.258 3.28e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mal1g2422 AUX_IAA 7.1e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2422 K14484 - gmx:100780214 334.339