Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2391 ATGTTCCCTGCACTTATGTCCAATTCCACTTCTTTCTCAGAAGAAACAGGTGTCTCTTCTAGTAGATTAAACCACGTTGTTTCAACCATTAACTCTCCACAACAGCCTCAAAAGACCAAGAAAAAAAGAAACCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCTACAAATAGATTTGTGTGTGAGATCTGCAACAAAGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCACCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGATAGCTTCATAACCCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAATTTCACAAACCAACAAAGCCACATCACTTGGGACCCACCTCACCAAAACCCTAACCCTAACAACCTCAACAACACTCTTACCAATCCCCACCACCACCACAACATCAAACCTGAATCTCAAAACTTTCACAACAACCTCTCTTCTCCTCCTCTTCCATTTCTTCATCACACAAACCCTAATTCTGCCACGTCACCACACCTCTCAGCAACTGCACTTCTCCAGAAAGCAGCTACCGTCGGTGCCGCCGCCATCACAGGCAGCAGCCAACCACAAATGACTCATCTCAGCATGGGAGAGTTTGGATCAGTACCTGATCACCATCACTACATGAGAGGGCTCACCGGAAAGAAGGACGACGGTCTCACGAGAGACTTTCTCGGCCTTACCAACGGCGGAGGAAATGGTGGTGGATCAGTTGACGTAAAAGATATGCTAACATTCACAGGGGGTGTAGAGTACCACCAACAACAACATCAAAACATGATGTTCAAGACACAGTCACAACAAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAATCGTGGGGGAATTGTTAA 1257 0.4304 MFPALMSNSTSFSEETGVSSSRLNHVVSTINSPQQPQKTKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQNFTNQQSHITWDPPHQNPNPNNLNNTLTNPHHHHNIKPESQNFHNNLSSPPLPFLHHTNPNSATSPHLSATALLQKAATVGAAAITGSSQPQMTHLSMGEFGSVPDHHHYMRGLTGKKDDGLTRDFLGLTNGGGNGGGSVDVKDMLTFTGGVEYHQQQHQNMMFKTQSQQGFGFLGTTTVPESWGNC* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2391 418 MobiDBLite consensus disorder prediction 238 262 - -
Mal1g2391 418 Gene3D Classic Zinc Finger 48 118 - -
Mal1g2391 418 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Mal1g2391 418 MobiDBLite consensus disorder prediction 28 52 - -
Mal1g2391 418 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 396 - -
Mal1g2391 418 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 7 396 - -
Mal1g2391 418 SMART c2h2final6 111 141 IPR013087 -
Mal1g2391 418 SMART c2h2final6 146 166 IPR013087 -
Mal1g2391 418 SMART c2h2final6 69 91 IPR013087 -
Mal1g2391 418 MobiDBLite consensus disorder prediction 28 42 - -
Mal1g2391 418 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Mal1g2391 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Mal1g2391 418 MobiDBLite consensus disorder prediction 271 297 - -
Mal1g2391 418 Gene3D Classic Zinc Finger 123 204 - -
Mal1g2391 418 MobiDBLite consensus disorder prediction 238 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2391 Mal-Chr1 32105650 32110016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2391 21 403 IDZ Gene Family AT4G02670 49.392 2.44e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g2391 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2391 K25870 - gmx:100812496 545.428