Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2368 ATGGTGAAGCAGATGCCTAATGATAAGATATGTGATGTTGTTTCTGGGAAAGAGTCATGGAGGTTGGTTGCTCGTGTTGTTAGGGTGTGGGAAGTTCCAATGTTTCTCAACCCTGAGCAGATAAGTTCAATTGAGATGGTTTTGGTTGATGAAATGGGTGACAAAATTCATGCAACTATAAGGAGGCAACTACTGTATCTTTTTCAGAAGAAGATTGTTGAAGGGGAAGTTTACAAGTTGTCATATTTTTCGGTTATTCCAAATTCTGGTACTTACCGGACGACAAAACATGCATACAAACTCATGTTCCAGATGAAAACTAAATTGACAGTTTGTGCTGCACCTTCAATTTCTAAATATGGCTTGTCATTTACTCCTTTAGCTGAAGTTATTAATCATACTCATGATTATGAGTTTTTGGTTGATGTTATTGGATTGATGACTGGAATTTCTGATGAAAGGGAGTATATTAGAGATGGAAAAATTACTAAAATGATTGTTGTTGAATTAACTGATGGGAGTGGTAAATGTGAGTGTGCTTTGTTTGGGGACTATGTTGATGATTTGAAGAAGATGATGGGTAAAGCTGCTGATGGGAAGCTTATTGTTGTTGTGCAATTTGCAAAGATAAAGATATTCAGGGATAAAGCTTCTATTCAAAATGTTATTAGTACAACAAAGGTTTATGTTAATCCCGACTTTCCAGAAGCTTTGAAGTTCAAAGAGAGTTTGGCTGCTGTTGTTGTTGCTGATGATGGCAATATATCTATTCCTTTGATTGGAAGTAGTGTTAAGCCAAATTTGGAGAGTGATTTTTTGACTACGGAAACTGGAAAGACTCTTCATGAGTTGGAGAACTTTGCTGAGGATGGAATTTATGTGGTGTATGCTAGAATTGATGGTGTTGTTCCTGGTGAAGATTGGTGGTATCCTGCTTGCAAATGTCATAGGAGTGTAATGCTTGATTCTGGTGCATATTTTTGCAAGGGTTGTGCGAAGCATGTTTTTAACATGATTCCTAGGTTTAAGCTGAAGTTGGAAGTTTCGAATGGAACTGACTCAGGAGTTTTTGTTCTATTTGATAATAATGTCCAATTTTTGTTGGGGAAGCAGTGTGTTGCATTGATTAATGATTTAAAGCCTGAGGATGTTGATCAAAAGCCAAGTTGTTTTGATGAGTTGAATGGCAAGAAGTTGTTGTTTAAGGTTGAGAAGTGTACTGCTGTGAACCCTATCTTTGATGGTTCTTATAAAGTTAAGAGGGTTTGTACTGATCCAAATATTATTGAAAAATTTGTGAAGTCTTATTATGATGACGACATTGATGAAGAATTTTTATCTGATCTTATAGTTACTCCAGGCCTTGATGACTTTGCAAATCTTCCGACTCTTGCTGAAAATGTTTGTACTGAAGTAGAAGGGGGTGTCAATTTAAAGAGGAATTTGGCTGAGGAGTTAGAAAATGTTGGCAAAGTTGGTTCAAGGAAGAGGTTGAGGAAAGTGAAGATAGAAAAAGATTGA 1521 0.3649 MVKQMPNDKICDVVSGKESWRLVARVVRVWEVPMFLNPEQISSIEMVLVDEMGDKIHATIRRQLLYLFQKKIVEGEVYKLSYFSVIPNSGTYRTTKHAYKLMFQMKTKLTVCAAPSISKYGLSFTPLAEVINHTHDYEFLVDVIGLMTGISDEREYIRDGKITKMIVVELTDGSGKCECALFGDYVDDLKKMMGKAADGKLIVVVQFAKIKIFRDKASIQNVISTTKVYVNPDFPEALKFKESLAAVVVADDGNISIPLIGSSVKPNLESDFLTTETGKTLHELENFAEDGIYVVYARIDGVVPGEDWWYPACKCHRSVMLDSGAYFCKGCAKHVFNMIPRFKLKLEVSNGTDSGVFVLFDNNVQFLLGKQCVALINDLKPEDVDQKPSCFDELNGKKLLFKVEKCTAVNPIFDGSYKVKRVCTDPNIIEKFVKSYYDDDIDEEFLSDLIVTPGLDDFANLPTLAENVCTEVEGGVNLKRNLAEELENVGKVGSRKRLRKVKIEKD* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2368 506 SUPERFAMILY Nucleic acid-binding proteins 122 245 IPR012340 -
Mal1g2368 506 Gene3D - 8 112 IPR012340 -
Mal1g2368 506 CDD RPA1_DBD_A_like 21 108 - -
Mal1g2368 506 Gene3D - 116 248 IPR012340 -
Mal1g2368 506 Pfam Replication factor-A C terminal domain 304 404 IPR013955 -
Mal1g2368 506 CDD RPA1_DBD_B_like 142 244 - -
Mal1g2368 506 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 14 373 - -
Mal1g2368 506 SUPERFAMILY Nucleic acid-binding proteins 288 403 IPR012340 -
Mal1g2368 506 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Mal1g2368 506 Gene3D - 269 422 IPR012340 -
Mal1g2368 506 PANTHER REPLICATION FACTOR A 1, RFA1 14 373 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g2368 506 Pfam Domain of unknown function DUF223 45 139 IPR003871 -
Mal1g2368 506 CDD RPA1_DBD_C 279 403 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2368 Mal-Chr1 31660774 31663053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2368 48 403 Core DNA Replication Machinery Family AT5G08020 23.324 5.13e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2368 - - mtr:MTR_8g062030 476.478