Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2338 ATGGCTGCTCCACCTCCACTAAGCAGTAAGCTTCAAAACATGTTGCAGGCTGCAGTGCAATCTGTTCAGTGGACTTACAGCCTCTTCTGGCATCTTTGCCCACAACAACTGATTTTGGTATGGGGTGATGGATATTACAATGGAGCAATTAAGACAAGGAAAACAGTGCAACCAATGGAGGTTAGTGCTGAAGAAGCTTCTCTACAAAGAAGCCAACAACTAAGAGAGCTGTATGAATCATTATCTGCCGGAGAGACAAATCCACCAACTCGCCGGCCATGTGCTTCCTTGTCACCTGAGGACTTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACGCAAGGAGGCAACATGTATGGCTCACGGGTGCAAACGAGGTGGATAGCAAAACATTTTCAAGAGCTATTCTAGCTAAGACTGTTGTATGTATTCCTGTTTTGGATGGCGTCGTTGAGTTCGGCACAACCGAAAAGGTTCAAGAAGACCTTAATTTCATCAAACACGTGAAGAGCTTCTTTGTAGACCAACACTCTCTACCGCCAAAGCCAGCACTCTCAGAACACTCAACCTCCAACCCAACTTCTGATCACATTCCTAACATCATGTACACTATGGCAGACCCACCCTCCACAAATCCCAATCAAGATGACATGGATGAAGACGAGGAAGAGGAAGAAGATGAAGACGACGACGAAGTCGAATCTGAAGACGAAACAGGTGGTCGTATCCCACGTGCAACCTCAATGACGGCGATTGTGGAGCCAAGTGAGTTGATGCAGATTGAAATGCCCAACGATATTCGTATTGGATCGCCTAACGACGGATCGAATAATTTAGATTCAGATTTTCATTTACTAGCGGTGAGTAATCAAAGGAACCCGTCAGGACACGTTGACTCGTACAAAATCGAGTCAACACAGAGATGGGGCCCAATTGAAGAACCGGTGGGTAATTCGCTACAAGTTCAACTACCATCTTCAGTGCTTCATCATCAACTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTTTCCACCATCCTCCATAACCAATCAACACCATGGATCTCCGATTCTTCACCTTCCATCAACTACATCACTTACTCCACCCAATCCTGCTTCACCAACTGGACCAACCACCACCACTTCCACCCACCACCACCGCCGGAAACCACCACCACCACCTCCCAATGCCTCCTCAAATACATGCTCTTCACAGTCCCATACCTCCACACTAAAAACCACGACGAAACCTCCCCTCAAACTCACGATGCAGGCGGTGACCCCTCCGCCAAGTTACGCAGCAAAGGAACACCGCAAGATGAGCTGAGCGCCAACCACGTACTCGCGGAGCGACGAAGAAGAGAGAAACTCAATGAAAGGTTCATTATATTAAGATCATTGGTTCCATTCGTGACAAAAATGGACAAAGCTTCTATATTAGGTGACACTATTGAGTATTTGAAACAGCTTCGTAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACCGAACATCAACAGCATAGGAGTGATGTAACGGTTTTGGTGGGTCCCACTGAGAAGAAAAAGGTGAGGATTGTGGAAGAATGTGGGGCCACAAGAGCCAAAGCTGTTGTTGAGACTGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATTGAGTGTTTGCATAGAGAAGGTTTGTTGTTGGATGTTATGGTAATGTTGAGGGAGTTAAGGATTGAGGTTATTGGAGTTCAGTCTTCGCTTAACAATGGTGTTTTTGTTGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTGGTATTGTGGAAGTTAAGAAAGCACTTAACCAAATTATACCTCACAACAACATTTAG 1962 0.4541 MAAPPPLSSKLQNMLQAAVQSVQWTYSLFWHLCPQQLILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPVLDGVVEFGTTEKVQEDLNFIKHVKSFFVDQHSLPPKPALSEHSTSNPTSDHIPNIMYTMADPPSTNPNQDDMDEDEEEEEDEDDDEVESEDETGGRIPRATSMTAIVEPSELMQIEMPNDIRIGSPNDGSNNLDSDFHLLAVSNQRNPSGHVDSYKIESTQRWGPIEEPVGNSLQVQLPSSVLHHQLEDLTQEDTHYSQTVSTILHNQSTPWISDSSPSINYITYSTQSCFTNWTNHHHFHPPPPPETTTTTSQCLLKYMLFTVPYLHTKNHDETSPQTHDAGGDPSAKLRSKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEHQQHRSDVTVLVGPTEKKKVRIVEECGATRAKAVVETEVVASVQVSIIESDALLEIECLHREGLLLDVMVMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVGIVEVKKALNQIIPHNNI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2338 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Mal1g2338 653 PANTHER TRANSCRIPTION FACTOR TT8 10 650 - -
Mal1g2338 653 Coils Coil 499 533 - -
Mal1g2338 653 MobiDBLite consensus disorder prediction 229 252 - -
Mal1g2338 653 MobiDBLite consensus disorder prediction 196 260 - -
Mal1g2338 653 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 188 IPR025610 -
Mal1g2338 653 PANTHER TRANSCRIPTION FACTOR TT8 10 650 - -
Mal1g2338 653 MobiDBLite consensus disorder prediction 198 228 - -
Mal1g2338 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 531 IPR036638 GO:0046983
Mal1g2338 653 Gene3D - 460 534 IPR036638 GO:0046983
Mal1g2338 653 SMART finulus 466 515 IPR011598 GO:0046983
Mal1g2338 653 Pfam Helix-loop-helix DNA-binding domain 463 510 IPR011598 GO:0046983
Mal1g2338 653 MobiDBLite consensus disorder prediction 431 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2338 Mal-Chr1 31144697 31156184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2338 10 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 72.637 7.64e-101 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g2338 bHLH-MYC_N 2.6e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2338 - - cam:101506726 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2338 1 31144697 31156184 Mal1g2338 1 31144697 31156184 ECH
Mal3g4389 3 123450497 123450987 Mal1g2338 1 31144697 31156184 PCT