Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2254 ATGGATCTTGTAAGTAGAAGATACTTGATCCATTTTTCATCACATGAGTCACAATCACAAGCTCTTGCTCCAACAACAAGTTCAAGTTCAATTTTTCATCCTTCTCATATGCATCATTCTAGCACAAGTTTTCCAATAATTGCAATTGCTATAATAGGAATATTAGCTACAATTTTCTTGCTTGTTTCCTACTACATCTTTGTGATCAAATGCTGTCTCAATTGGCACCGTATCGATCTTCTACGACGTTTCTCTCCGTCTAGAAGGCGTCAAGATCCAACAACAATACAATCACCGGGGACAGAACCTCGCGGTCTAGACGAAGCTGTGATTCGGTTAATTCCGGTGATTCAATTCAAAGCAGAAGAAGGAAATAAAGACTCTGCTGATTCAGAGAGTTTTTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAGCTTAGGATTATACCAAATTGTAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCTTTGACAAGAAGGTTCCATTTTGATCAAATGCTCACACAAGGGCCTTTTTCAACTCAAGATCAAAACCAAACTAGTGAAAATCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGAGTAAGAATGATGCTATGGAGTTACCATTACCAAGACCAACTCAAAGTTCTATTAGTCCTTCACCAAGGAAATTATTGGAGCATAGAAATGTTGAGAAGAAAGGAAGGAAAAAGTTGCATAAAGTTACTAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGATCAATTTTCAGTTCAACCTATTAGAAGATCATTTTCAATGGATTCATCAGGTGATAGACATTTCTATTTAGCAGTTCAAGAAGCTCTGCAGCAGCAAAAGAGGCAAGTCAATGAAGTCAACAACTCCATTGAAGGATGCAGTGGTGGTAGTGGTAGAGCTAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCTAGAAGTTCTTCTGTTCAACCTGTTTATTTAGACCCCTGA 1080 0.3667 MDLVSRRYLIHFSSHESQSQALAPTTSSSSIFHPSHMHHSSTSFPIIAIAIIGILATIFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIQSPGTEPRGLDEAVIRLIPVIQFKAEEGNKDSADSESFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTRRFHFDQMLTQGPFSTQDQNQTSENLIGGDEDFVVIELSKNDAMELPLPRPTQSSISPSPRKLLEHRNVEKKGRKKLHKVTSMGDECIDIRATKDDQFSVQPIRRSFSMDSSGDRHFYLAVQEALQQQKRQVNEVNNSIEGCSGGSGRAKKSFFSFGYGSRSRSSSVQPVYLDP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2254 359 MobiDBLite consensus disorder prediction 340 359 - -
Mal1g2254 359 CDD RING-H2_PA-TM-RING 136 179 - -
Mal1g2254 359 PANTHER RING-H2 FINGER PROTEIN ATL16 20 358 - -
Mal1g2254 359 Coils Coil 303 323 - -
Mal1g2254 359 Pfam Ring finger domain 136 179 IPR001841 -
Mal1g2254 359 MobiDBLite consensus disorder prediction 342 359 - -
Mal1g2254 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 184 IPR013083 -
Mal1g2254 359 SMART ring_2 137 178 IPR001841 -
Mal1g2254 359 PANTHER RING-H2 FINGER PROTEIN ATL16 20 358 IPR044600 GO:0016567|GO:0016740
Mal1g2254 359 SUPERFAMILY RING/U-box 136 185 - -
Mal1g2254 359 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2254 Mal-Chr1 29862237 29863316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2254 40 359 C3H Transcription Factor Family AT1G04360 51.404 7.83e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2254 - - gmx:100775286 489.189