Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2220 ATGGCTACCCCTCAGTCCCAACATCGCTGTGTCTTTGTTGGGAACATACCGTATGATGCTACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTTGTCTCTTTTAGGTTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCCCGTAGGAATCTTCAGGGTTATGAAATTAATGGGCGTCAACTACGCGTTGATTTTGCGGAGAATGATAAAGGGACGGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACAACAAATGTTGACCCTCAGAAACAAGTAGGCATCCCAGCTGTCCAAGGGGAATCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCGTAACAGCTGCAGCTGTCATGGCTGCAGCTCTAGGTGGTGCTCAGACTGGCATCCCATCAAATCAAAATGGTTTGCTGAGTCAGCAGGCATTAGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTATCTGAGATAATCTCAGAGCTTAAGGGAATGGCTACACACAACAAGGAATTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGAAGGTCACCCCCCAAATGTTAAAAATGCCAAACCTTAGACAAATTTCAGATCAAACCTCACAGTCTTTAATTAATGAAGGCCACCTTGGTCAGACTCAGCAAACATTGGTTCCAACTGTGGCTGGTCTACCTCCTTATGGACAGAACAAATTGCAGTCTGGCTTGACACCTTATATTCAAGAAGGCCAAGTCAGCACTCTCCCTCATAACCCTTCGGCTCCTAGTCAATCGACCGTAAATCCAAAGCCTCCACTGCAGCCTAGATATCCCCCTCAACATCATCAAAGCAACCATTTTGTACAGCCTGGAACAGGGCAGAATAATGTAATGCTTCCTTCCATACGTCCCCCAACTTCGGGCAGTTTTTCTGTTAGGCCCCCATTTCAACAAGCAAATTCAACTGCTGTGAACCAGCAACCGCATGCCTCATTCCTACAACAACCAGTACATGTTGGAAGCTCAACTGTCTCACATAATATTCATATGGTTCGTCCAGATGCAAGCTTTCAGGCTGGCCCCTCCATGCCATCTGGTGTTTCTCAGTTATTTAGCAAGGAAGGTGATAGATCTTCCAACACTGTTGAGGATTGGGCCAAGAGTAGTAGTAAATATTCAAACGTAGCTTTCGGAGTAGAGAATACAGGCATGGTTCGTGATATTCCAGAATCCTTTGCTCGACCGTCAAAGCTCACTAGATTGAATGACGGAAGGGGTCTCTCTGCTGGGACTTCAGACGTACCCATCACCAACGGGTCATCCCATGTTCTTGGAAGTAGCTCATTAGTACCTGCAGTTCCTAAAGCAGATGTGCGGCACTCTGATCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAACAAGCGCTTAAGCGAGATCAGATGCAGCACTCATAA 1656 0.4607 MATPQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTTNVDPQKQVGIPAVQGESAQAAQHQPIGLHIAVTAAAVMAAALGGAQTGIPSNQNGLLSQQALANDPLTLHLAKMSRSQLSEIISELKGMATHNKELSRQLLLSRPQLPKALFQAQIMLGKVTPQMLKMPNLRQISDQTSQSLINEGHLGQTQQTLVPTVAGLPPYGQNKLQSGLTPYIQEGQVSTLPHNPSAPSQSTVNPKPPLQPRYPPQHHQSNHFVQPGTGQNNVMLPSIRPPTSGSFSVRPPFQQANSTAVNQQPHASFLQQPVHVGSSTVSHNIHMVRPDASFQAGPSMPSGVSQLFSKEGDRSSNTVEDWAKSSSKYSNVAFGVENTGMVRDIPESFARPSKLTRLNDGRGLSAGTSDVPITNGSSHVLGSSSLVPAVPKADVRHSDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQHS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2220 551 MobiDBLite consensus disorder prediction 288 350 - -
Mal1g2220 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Mal1g2220 551 Gene3D - 2 114 IPR012677 -
Mal1g2220 551 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 546 - -
Mal1g2220 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Mal1g2220 551 Pfam Hinge domain of cleavage stimulation factor subunit 2 166 232 IPR025742 -
Mal1g2220 551 MobiDBLite consensus disorder prediction 453 484 - -
Mal1g2220 551 MobiDBLite consensus disorder prediction 83 111 - -
Mal1g2220 551 Pfam Transcription termination and cleavage factor C-terminal 513 545 IPR026896 GO:0031124
Mal1g2220 551 SMART rrm1_1 10 83 IPR000504 GO:0003723
Mal1g2220 551 Gene3D - 499 547 IPR038192 -
Mal1g2220 551 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Mal1g2220 551 MobiDBLite consensus disorder prediction 316 350 - -
Mal1g2220 551 MobiDBLite consensus disorder prediction 468 484 - -
Mal1g2220 551 CDD RRM_CSTF2_CSTF2T 11 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2220 Mal-Chr1 29368871 29375083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2220 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2220 K14407 - gmx:100794399 717.998