Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2181 ATGGATCCTCATACCCAAGATTTTCCTCAATACATTCATATCGATCAAAATGATTTTTCTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTGTATGCGAATGCTGGTATTATGAAGATGAACCTTACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGACGAGGTTTGTCAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATATTGTGGAGAAGTAATATCATGTAAAGAAGCCAAACGCAGATCCCATACTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAACGTCCTGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGCGGAGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGATAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACCTCTAATGTTAATGGACAGAGTGAGCAATCCATGGCTATTATACTTAAAGATGAAGAACTATCGGAGTCCACTGTTTTAAATGTTCAACCACTCAATTCAATTGGGATCAATGATTTAGGTATTAAGAAAATGAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTATTCCCAAGATACCGAACAGGACCTTCAACAAAAAAATGCAATGATATCGCGCATCCGAAGTAACACTGCAGGAAGAAACTATCGCCTTGGACCGAAGTCCATCTCTACCAAAAGATCAAAGGGGGGAAGGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATCTTAGATTATGAGAAACGAAAAGATGACGCTACCGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCAACGACAGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAACTGAAGGCGGAGTTTGATCTTTACTCGTCAATTGTTAAAAATGTTGCTTGTACTGCTCAAAGGGCGCCCGGCCAAGCAAAAGCTACTGAAGTAGACGACGAAAACAAAATTAAGCTTTTGACATTCTCTCCCTCATCTAATCTGTAA 1455 0.3993 MDPHTQDFPQYIHIDQNDFSMRRHKKQKEEDIAVCECWYYEDEPYSACGDGCLNVLTSTECTPGYCPCDEVCQNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVNGQSEQSMAIILKDEELSESTVLNVQPLNSIGINDLGIKKMKTEIVSEDMKLYSQDTEQDLQQKNAMISRIRSNTAGRNYRLGPKSISTKRSKGGRFKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKATEVDDENKIKLLTFSPSSNL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2181 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 9 416 - -
Mal1g2181 484 Gene3D SET domain 2 235 IPR046341 -
Mal1g2181 484 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Mal1g2181 484 Coils Coil 378 405 - -
Mal1g2181 484 SMART set_7 83 206 IPR001214 GO:0005515
Mal1g2181 484 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Mal1g2181 484 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Mal1g2181 484 PANTHER SET DOMAIN PROTEINS 9 416 - -
Mal1g2181 484 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Mal1g2181 484 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Mal1g2181 484 SUPERFAMILY SET domain 11 220 IPR046341 -
Mal1g2181 484 Pfam SET domain 94 200 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2181 Mal-Chr1 28768317 28774124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2181 65 222 C2H2 Transcription Factor Family AT2G23740 35.359 7.27e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal1g2181 SET 3.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2181 - - gmx:100804657 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2181 1 28768317 28774124 Mal1g2181 1 28768317 28774124 ECH