Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2177 ATGTCTTGTCCTATTGTTTCAGCGCCGACTCATGGATTGGGCCAGGCCCAAAATGAGTGGGTCCAACAAGTCCAACAACAAGGAAGTGGTTATTTTCCTATGATGTCAGGTTTTGTTCCTGTCTCTTCTAGTTATAATTCTCCTCGTATGAGTTCTTCTAGTGGTGCTCTTTTGGGGTCTGGTTCTGGTTCTTGGGTTGGACATAAAAGAGGGCGTGAAGATGGTGTTCATAGGAGTGATGATGTTGTTGGTGGTTCTTCTCAACAAGATATGACTACAATTCATAGAAATATTGCTGATTTCAGATTACCTTCATCCCAGGGAAATTCATCATCAGCAACAGAAGCAACTGCAACAACTACAAGTACAAGCAACACAACACAATCAAGTGAAGCAGCAGCAACAAACGAAGAAGAAACCGGCGAGAAAAGAAGAAGATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTTGAAACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTACAGCAACAAGACCAACTTTTCCGACGAATATTTCAACGGTATCAGTTTCTCCGGCAACACATTATTCACCTGCACCACCGCAAATGCAGCCACAACAGCCATTTCTTCAGTTTCAAAGCTCTTCTGATTTGTTGAGAGACTATTATCAATATTCTCAGATTCTGAAAGGTTCTGGTGATTTTCAAGGGCTTGAACAATGGTTCTATGAATCTCAAATGGCAGCAATGCATTCATCTTCTTCGATGTTATCGCCAACGCCGTCACTTTCCTTGTCATCTTCTTCATCTCCAACTGCATTTTCACCTTCCAGTCAATTATCCTCTGTTTCACTTCCCCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGCCACCGGAAGATCACTCTCGCGGCGGAGGATACAGTGGTGGGTCCCATTTTCCACCTTCAACATGGTCAGATACTGGTGGTTATCATCCTCCTCCACCACCACCACCTTCTTCAAGTTGA 1107 0.4399 MSCPIVSAPTHGLGQAQNEWVQQVQQQGSGYFPMMSGFVPVSSSYNSPRMSSSSGALLGSGSGSWVGHKRGREDGVHRSDDVVGGSSQQDMTTIHRNIADFRLPSSQGNSSSATEATATTTSTSNTTQSSEAAATNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVTATRPTFPTNISTVSVSPATHYSPAPPQMQPQQPFLQFQSSSDLLRDYYQYSQILKGSGDFQGLEQWFYESQMAAMHSSSSMLSPTPSLSLSSSSSPTAFSPSSQLSSVSLPLFPGQQMEFFRPPEDHSRGGGYSGGSHFPPSTWSDTGGYHPPPPPPPSSS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2177 368 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 MobiDBLite consensus disorder prediction 44 60 - -
Mal1g2177 368 MobiDBLite consensus disorder prediction 354 368 - -
Mal1g2177 368 Pfam AP2 domain 146 195 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 CDD AP2 154 205 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 PANTHER DNA-BINDING DOMAIN 5 328 IPR044808 GO:0003700|GO:0009873
Mal1g2177 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 5 328 - -
Mal1g2177 368 SMART rav1_2 146 209 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 MobiDBLite consensus disorder prediction 102 135 - -
Mal1g2177 368 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677
Mal1g2177 368 MobiDBLite consensus disorder prediction 44 89 - -
Mal1g2177 368 Gene3D AP2/ERF domain 145 205 IPR036955 GO:0003700|GO:0006355
Mal1g2177 368 MobiDBLite consensus disorder prediction 102 148 - -
Mal1g2177 368 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Mal1g2177 368 MobiDBLite consensus disorder prediction 323 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2177 Mal-Chr1 28736458 28738344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2177 82 238 AP2-EREBP Transcription Factor Family AT5G61890 46.584 2.37e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g2177 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2177 - - lja:Lj5g3v1937400.1 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2177 1 28736458 28738344 Mal1g2177 1 28736458 28738344 ECH
Mal8g3481 8 98871279 98873257 Mal1g2177 1 28736458 28738344 PCT