Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2160 ATGTCTTTCCGTAGTATAGTTCGTGATGTGAGAGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCACGTAGTTCGGTCCATGAATTGCATGATCAACCTCCAGTTATACAGAACAGCCCGTGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATCAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTGTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACAGTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGGAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTATCTGCAAAACGTACCAGAAGAACAACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTTAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGCGGCAGCTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAACTGCACTATGCAGTCAATCCCCGCATCATCCCTCGAGCCTGGTGGCATTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTCGAGGATTCTTTCCGTAGTTTATCCTTTGCAAGATCAATTGATAACTCAACCGAGTTTAGCAGCTGTAGGTTCTCAGACATAATGGGAGCTGGCAATGAAGACGAAGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCGAGGTGGCACGAACAGCTGCAATGTTGGTGCCTTAACTTCAGGGGACGAGTGACTGTTGCATCTGTCAAGAATTTTCAGCTGATCGCTGCAACACAGCCTGCAGCAGGTGCTCCTAGTACAGCGACAGGACCTGCACCATCACAGCCGGCACAGTCCGACCACGACAAGATTATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTTACAATGGACTATCGATACCCTCTCTCGGCATTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTGGCATGTGAATAA 1296 0.4707 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNSLEYCGKITFPVSLKEPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMQSIPASSLEPGGIVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPSTATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2160 431 PANTHER TUBBY-RELATED 1 431 - -
Mal1g2160 431 Gene3D - 48 102 - -
Mal1g2160 431 Pfam F-box domain 53 99 IPR001810 GO:0005515
Mal1g2160 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Mal1g2160 431 SUPERFAMILY Tubby C-terminal domain-like 103 431 IPR025659 -
Mal1g2160 431 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Mal1g2160 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Mal1g2160 431 Pfam Tub family 114 426 IPR000007 -
Mal1g2160 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 431 - -
Mal1g2160 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Mal1g2160 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mal1g2160 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2160 Mal-Chr1 28482390 28484708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2160 1 431 TUB Transcription Factor Family AT1G76900 70.549 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal1g2160 Tub 6.7e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2160 K19600 - gmx:100817532 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2160 1 28482390 28484708 Mal1g2160 1 28482390 28484708 ECH