Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2049 ATGAAGATCCACCAAAAAGACGGCTCTTCCTCTTCTAGAGTTGGCTATGATGCATTGGAGTATCTTAAGGCAGTAAAATTTACATTTCAATATAATAGGATAAAGTTTGATCAGATTTTAAATCTCATAAAGCTTCTCCAGGCTGGAAGAATTTATATTTATACAAATCCTAGAAAGTATGATGAGTATTTAAACTGCGTCAAAGCAAGAGTGAAGAAGCTGCTTAAAGGGCATACACATTTAATTTTGGGATTCAACATCTTCCTGCCAAAGGAACATCAATTCACACTTTCATTAGGATTATTAGGGTTTCAAGATCCATTAGCGTTTCGTAAGGCAGTCAAAGTCGCGCTTCAAGAGAAGAGGGAAAATTATTATAATGACTTTTTAAAAGTCATAAAAGATTTTGAGGATCAAAGAATTGATTTAAGAGGCGTCGAGGCAAGAGTCAAGGAGCTGCTTAAAGGGCATACAGATTTAATTTTGGGATTCAACATCTTCCTGCACAAGGAACATCTTCAGACGACTGGGAAAAAGATGAAGAAGGTAGAAGAGAACAATGAACTTCCTTTGGATGTGCTTGACATCATTTCCAAAAATTTAGATTTTGACGACCACTTTCAATTTGCCGCTGTGTGCAAGAATTGGAGGACTTTTCATAGAAGTTATTGGAGAAATTTCTTGGCATCCCAACAACCATCAGTTCTTCAAATTTCGTACCATGATGGGGAATCGTATTCCTTTATTAACGTACCTGACCAAAAAGTTCATCACTTGAAGATGATGAAGTACTTCCCCACATTTAACTATGTTACGTCTTCTAGCGGATATTTTATCATGGTGGAGTACTACAAAAATACATTCATGCTAATCAACCCATTTACAAGAATAAAGAAGGGAGTGTTGTTGATTTTGTGGTTTTGCATAACATAA 933 0.3591 MKIHQKDGSSSSRVGYDALEYLKAVKFTFQYNRIKFDQILNLIKLLQAGRIYIYTNPRKYDEYLNCVKARVKKLLKGHTHLILGFNIFLPKEHQFTLSLGLLGFQDPLAFRKAVKVALQEKRENYYNDFLKVIKDFEDQRIDLRGVEARVKELLKGHTDLILGFNIFLHKEHLQTTGKKMKKVEENNELPLDVLDIISKNLDFDDHFQFAAVCKNWRTFHRSYWRNFLASQQPSVLQISYHDGESYSFINVPDQKVHHLKMMKYFPTFNYVTSSSGYFIMVEYYKNTFMLINPFTRIKKGVLLILWFCIT* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2049 310 Pfam Paired amphipathic helix repeat 126 168 IPR003822 GO:0006355
Mal1g2049 310 Pfam Paired amphipathic helix repeat 38 89 IPR003822 GO:0006355
Mal1g2049 310 SMART fbox_2 189 227 IPR001810 GO:0005515
Mal1g2049 310 Pfam F-box domain 188 218 IPR001810 GO:0005515
Mal1g2049 310 PANTHER SIN3A, ISOFORM G 14 98 - -
Mal1g2049 310 PANTHER SIN3A, ISOFORM G 104 182 - -
Mal1g2049 310 ProSiteProfiles PAH domain profile. 100 171 IPR003822 GO:0006355
Mal1g2049 310 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Mal1g2049 310 Gene3D Paired amphipathic helix 17 90 IPR036600 GO:0006355
Mal1g2049 310 SUPERFAMILY F-box domain 187 235 IPR036047 GO:0005515
Mal1g2049 310 ProSiteProfiles PAH domain profile. 10 92 IPR003822 GO:0006355
Mal1g2049 310 PANTHER SIN3B-RELATED 14 98 IPR039774 GO:0003714
Mal1g2049 310 PANTHER SIN3B-RELATED 104 182 IPR039774 GO:0003714
Mal1g2049 310 ProSiteProfiles F-box domain profile. 183 227 IPR001810 GO:0005515
Mal1g2049 310 SUPERFAMILY PAH2 domain 103 170 IPR036600 GO:0006355
Mal1g2049 310 SUPERFAMILY PAH2 domain 16 92 IPR036600 GO:0006355
Mal1g2049 310 Gene3D - 187 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2049 Mal-Chr1 26924604 26929325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2049 17 97 WRKY Transcription Factor Family AT4G12020 38.272 3.11e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g2049 PAH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2049 K11644 - cam:101488742 262.692